Mucilaginibacter ginkgonis: GO620_007845
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Entry
GO620_007845 CDS
T07235
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mgik
Mucilaginibacter ginkgonis
Pathway
mgik03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgik00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GO620_007845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgik03019
]
GO620_007845
Enzymes [BR:
mgik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GO620_007845
Messenger RNA biogenesis [BR:
mgik03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GO620_007845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
Cas3-like_C_2
SUa-2TM
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QQL51345
UniProt:
A0A6I4HYA8
LinkDB
All DBs
Position
complement(1698763..1700022)
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AA seq
419 aa
AA seq
DB search
MLFQDLKLIEPILKALKIEGYTTPTPIQEQAIPIILQHKDLLGCAQTGTGKTAAFAIPVL
QNLYNNRTQHKEQKTIKALVLTPTRELAIQIDESFAAYGRHTGIKHAVIFGGVSQNPQVD
ALRRGIDILVATPGRLLDLMNQRFVNLSHLQVLILDEADRMLDMGFVNDVKKIIAKVPAK
RQTLFFSATMPKEIQTLADTILYKPEKVEVTPVSSTADTINQSVYFVGKPDKKLLLSHIL
KDKSIGRVLVFTRTKHGADKVVKDLHKAGVTAEAIHGNKSQNARQRALTNFKNSTTRVLV
ATDIAARGIDVDDLSHVIQYELPEIPETYVHRIGRTGRAGLNGTAFAFVDEEEKDLLKDI
HKLIGKTIPVDAAHPYPLKELTAAERVKLELQQKENKANKASQPKRGRGFGRGGNKGRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgttatttcaggatcttaaattaattgagcctatcctcaaggctttaaaaatagaggga
tataccacgcctacgccaatccaggaacaagctatacccattattttacagcacaaagac
cttttgggttgcgcgcaaacaggcaccggtaaaacggcagcgttcgccattcccgtgctg
caaaatctttataacaaccgtacgcagcacaaggaacaaaaaaccattaaagccctggtg
cttaccccaacccgcgaactggctatacaaatagatgaaagtttcgccgcttacggccgg
cacaccggtattaagcacgcagtaatatttggcggggtatcacaaaacccgcaggtggat
gccttgcgtcgcggaatagatatattggtagccacgcccggccgtttgctcgatttgatg
aaccagcgttttgtgaacctttcgcacctgcaggttttaattttagacgaggccgaccgt
atgctggatatgggctttgtgaatgatgtaaaaaagatcatcgctaaagtaccggctaaa
aggcaaacgctgtttttctcggctaccatgcctaaggagatacagacacttgcggatacg
atattgtacaaaccagaaaaggtagaggttacacctgtttcttcgactgcagatacgatc
aaccaatcggtttattttgtaggtaagccggataagaaactgttgctttcgcacatcctg
aaagacaagagcatcggccgtgtgttggtatttacccgcaccaaacatggtgctgataaa
gtggtgaaagacctgcacaaagcaggggtgactgccgaggccattcatggtaacaaatcg
caaaatgcccgccaacgcgccttaaccaattttaagaacagcactacaagggttttagtg
gctacggatatcgcggcgcgcggtatagatgttgacgatctaagccacgttatccaatat
gagttaccagagataccggaaacgtatgtacaccgcattggccgtacaggcagggcaggc
ttaaatggtacggctttcgcctttgtagatgaagaagaaaaagacctgcttaaagatatt
cataaactgataggtaaaactattccggtggatgctgcccacccatatccgttaaaggag
ctgactgctgccgagcgcgtaaagctggaactgcagcaaaaagaaaataaggctaacaag
gcatcgcaaccaaaacgtggccgcggatttggccgtggcgggaataaaggcaggcgttga
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