Mucilaginibacter ginkgonis: GO620_008560
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Entry
GO620_008560 CDS
T07235
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mgik
Mucilaginibacter ginkgonis
Pathway
mgik03030
DNA replication
mgik03430
Mismatch repair
mgik03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mgik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GO620_008560 (dnaE)
03430 Mismatch repair
GO620_008560 (dnaE)
03440 Homologous recombination
GO620_008560 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mgik03032
]
GO620_008560 (dnaE)
03400 DNA repair and recombination proteins [BR:
mgik03400
]
GO620_008560 (dnaE)
Enzymes [BR:
mgik01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GO620_008560 (dnaE)
DNA replication proteins [BR:
mgik03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GO620_008560 (dnaE)
DNA repair and recombination proteins [BR:
mgik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GO620_008560 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
DUF6282
Motif
Other DBs
NCBI-ProteinID:
QQL48251
UniProt:
A0A6I4HZ03
LinkDB
All DBs
Position
1860302..1863886
Genome browser
AA seq
1194 aa
AA seq
DB search
MPDFSHLHVHTQFSLLDGAADISKLYKKAAADGMKALAITDHGNMFGVFKFVAEAGKHNI
KPIVGCEFYVVEDRHKKQFTKENRDVRHHQLLIAKNAEGYKNLIKLCSLGYMEGLYSKWP
RIDKELILKHHKGLIATSCCIGASVPQAILKKSEAEAETEFKWWLDLFGDDYYIELQRHE
IPEQLTINETLLKFAKKHNVKVICSNDSHYVDQQDSNAHDILLCVNTGDMQSTPIATDEE
GGKGYRFGFPNDQFYFKTQAEMGKLFADIPESLDNTNEIVDKVDVLKLKRDIMLPNFPIP
EKFKIHSGPESDTLNQWEYLKHLTFEGAKERYRDITPEVEERINFELFTIRTMGFAGYFL
IVADFIREGRNIGVFIGPGRGSAAGSVVAYCTGITNIDPIKYNLLFERFLNPDRKSMPDI
DTDFDDEGRQKVIDYVVDKYGRNQVAQIITYGSMAARTSIQDVGRVLDMPLSEVNMLKKL
VPETLGITLKGAIDQVPELKEIYGSKELKGIVLREAEKLEGSVRNTGVHAAGIIIAPDDL
TNIVPVATAKDSDLLVTQYDGRVIEDAGVIKMDFLGLKTLTIIKGALQMIKENHGVEIDI
DYIPLDDQKTFELYQRGDTNGTFQFESDGMQMYLRELKPDKFEDLIAMNALYRPGPIEYI
PNFIKRKHGLEPITYDLADMEEYLSESYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMG
KKQIEVLNKMEAQFMDGAVAKGHPKDKLTKIWTDWKAFAQYAFNKSHSTCYAFVAYQTAW
LKAHYPAEYMSAVLNNQNSIDKISFFMEECRRMGINVLGPDVNESFLAFTPNAKGEIRFG
LGGIKGVGEKAIESIIDERKENGPYQNIYDFAKRTNTRNVNKKSYENLVYSGAFDGFNMK
RAQFFAKTENGLLTGVERLIKFSADYQNTQNSSQVSLFGGAVASYIPEPTMPESEEWPLI
EKLKYEKDMIGIYLTGHPLDNYKHELQRFCNSTVSDLKLMVKARSGEGGEEVQNAFNELR
KRGEICVGGLMSNVQHKMTKTGKPFGTFILEDYNESYEFALFGDDYIKFRNLMSDGYFVH
IKGHIIEKFRQVGNWDLGISAISLLSEMRDKHTKSLTVHIEINSLSNQLLLDLKQIVDNN
NQKYPAKNCMLKFLVKDQAENLSIQMPSKSVKVNPSDDLLEEIMQLTHVAPVLA
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgccggatttttcgcacctacacgtacacacacagttttcattattagacggggcagca
gatatttcgaagctgtataaaaaagccgcagccgatggtatgaaagcactggccataacg
gaccatggcaatatgttcggcgtatttaaattcgtggcagaggccggtaagcacaacata
aaaccaattgttggctgcgagttttatgtggtagaagaccgtcataaaaaacagtttact
aaggagaaccgcgacgtacgccatcatcaactcctgatcgctaaaaacgccgaaggttac
aaaaaccttattaaactctgctcgctgggttatatggaaggcctgtacagcaagtggccg
cgaatagacaaagaacttatacttaaacatcacaaagggctaattgccacaagctgctgt
attggtgcttctgtgccgcaagccatccttaaaaaatcagaagctgaggctgagacggaa
ttcaaatggtggctcgatctttttggcgatgattattacatagaactgcagcgccatgaa
ataccggagcagctgaccattaatgagacactgctcaagtttgctaaaaagcataatgta
aaggtgatttgctctaatgactcacactacgtggatcagcaggactcaaacgcgcacgac
attttgctttgtgtaaataccggcgatatgcaaagcacccctatcgctactgacgaggaa
ggcggcaaaggctaccgctttggattccctaacgatcagttttattttaagacccaggca
gagatgggcaaactttttgccgacatccccgagtcgctcgataataccaatgagatagtt
gacaaggtagatgtgctgaagctgaaacgcgacatcatgttgcctaacttccctataccc
gaaaagtttaagatccattcagggcccgaatctgatacgcttaatcaatgggaatatcta
aagcaccttacctttgaaggtgccaaagaacgttaccgcgacattactcccgaagttgaa
gagcgtattaactttgagttgttcaccatccgcaccatgggctttgcgggttactttttg
atcgtggccgactttatccgcgagggacggaatattggtgtttttattggtccgggccgt
ggctcggctgccggttctgtggtagcctattgtactggtattaccaatatcgacccgata
aagtataacctgcttttcgaacgtttcctgaaccctgatcgtaaatcgatgcccgatatc
gatacggactttgatgacgagggccgccagaaggttatcgactacgtggtagacaaatac
ggtcgtaaccaggtagcgcagattataacttacggctctatggctgcccgtaccagtata
caggacgtaggccgggtgttggacatgccgctttctgaggtgaacatgcttaagaaactg
gttcccgaaactctaggcataactttaaaaggcgctatagatcaggtacccgaactaaaa
gaaatttacggaagcaaagaacttaagggcattgtgcttcgcgaagcagagaaattagag
ggctctgtacgtaatacgggcgttcacgccgcgggtatcattatcgcacccgacgatttg
accaatatagttcctgtcgcgacagcaaaagattctgatctgcttgttacccaatacgat
ggccgtgtaattgaagatgccggtgtaatcaagatggactttctgggcttaaaaaccctc
actatcattaagggcgcgttgcagatgatcaaagagaaccacggagtagagatcgacatt
gattacattccgctggatgatcaaaagacctttgagctttaccagcgtggcgatactaat
ggcactttccagtttgaaagtgacggtatgcaaatgtacttgcgcgagttgaagccagat
aagtttgaagacctcatagccatgaacgccttgtatcgcccgggaccgatagagtacatc
ccgaattttataaagcgtaagcacggtcttgagcccattacctacgatctggcagatatg
gaggagtacctgtcagagtcatatggaattacggtttaccaagaacaggtgatgcttcta
tcgcaaaaattggcgggctttagcaaaggtgacgccgacgttttgcgtaaggcaatgggt
aaaaagcagatagaggtgcttaataaaatggaagcccagtttatggacggcgctgttgcc
aaaggccatcctaaagataaactgacaaagatctggaccgactggaaagcctttgctcag
tatgcctttaacaaatcgcactctacttgttacgcctttgtggcctatcagaccgcctgg
ctaaaggcgcattatccggcagagtacatgtcggcggtgttgaataaccagaacagtatc
gacaagatctctttttttatggaagaatgccgccgtatgggtatcaacgtgctaggcccc
gatgttaacgaatcattcctggcatttacgcctaatgctaaaggcgagatccgttttgga
ttgggcggtataaaaggcgttggtgaaaaggctatcgaaagcattattgacgagcgtaaa
gaaaatggcccataccaaaacatttacgactttgccaagcgaactaacacccggaatgtc
aacaaaaaatcgtacgaaaatttagtttacagcggagcctttgacggctttaatatgaag
cgcgcgcagttttttgccaaaaccgagaatgggttgcttaccggtgttgaacgcttaatt
aagttttctgcagattatcagaatacacaaaacagttcgcaggtatcgttatttggcggg
gcggttgcgtcatatatcccagagcctacgatgcccgagagtgaagaatggccgctgata
gaaaagctaaagtacgaaaaggatatgatcggtatttatttgaccggtcacccgctcgac
aattataaacacgaattgcagcgtttttgcaatagcaccgtaagcgatctcaaactgatg
gttaaagcccgctcaggcgaaggcggcgaggaggtgcagaatgcctttaacgaattgcgt
aaacgcggcgaaatatgtgttggaggtttaatgagcaacgtgcagcacaagatgactaaa
acgggaaagccgttcggcacatttatattggaagattacaacgaatcgtacgagtttgcc
ttgtttggtgacgattatataaaattccgcaacctgatgtccgatgggtattttgtacac
atcaaaggccatatcatcgaaaagttccgtcaggtgggcaattgggatctgggtatcagc
gctatatcattactctcagaaatgcgcgataagcataccaaatcgcttacagtacatatc
gagattaattcgttaagcaatcagttgctcttagacttaaagcagatagtagacaataac
aatcagaaatatccggctaagaattgcatgctcaagtttctggtgaaagaccaggcggaa
aacctgagtatacaaatgccatcaaaatctgtgaaggtaaacccaagcgatgacctgctc
gaagagatcatgcagttaacgcatgtagcgccggtgctggcttag
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