Mucilaginibacter ginkgonis: GO620_014095
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Entry
GO620_014095 CDS
T07235
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mgik
Mucilaginibacter ginkgonis
Brite
KEGG Orthology (KO) [BR:
mgik00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mgik03009
]
GO620_014095 (rlmD)
Enzymes [BR:
mgik01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GO620_014095 (rlmD)
Ribosome biogenesis [BR:
mgik03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GO620_014095 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
Methyltransf_25
MTS
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_11
FtsJ
DUF6623
PrmA
HVO_0513_N
Methyltransf_2
Motif
Other DBs
NCBI-ProteinID:
QQL49294
UniProt:
A0A6I4HZ78
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All DBs
Position
3031638..3033044
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AA seq
468 aa
AA seq
DB search
MKVRPANAVFENVNIIDIAEEGKGVGKTDDLVLFIEKAVPGDIVDVEVYRKKKNFGEAKI
IHLKQLSAYRTEPFCEHFGTCGGCKWQHMTYEAQLQFKQKSVADALSRLAKLDVSNMLPI
VPSPHDRYYRNKLEFTFSDKRWLYDGENRESETLDMNALGFHIPGRFDKILDVKHCYLQE
DPSNDLRNAIRDFAKEHNISFYNLKHHEGALRNLIIRTSSSGELMVIVVFAYPEEGQVEL
LMEYVQRHFPQITSLLYIINQKKNDTIFDQEVITWNGPQYIHEGMDEVIFRIGPKSFYQT
NAVQAKRLYEITRDFAEFTGNELVYDLYTGAGTIANFIAKHVNKVVGVEYVPSAIEDAKI
NSNINNITNTDFYAGDMKDVLDQNFTATHGKPDVIITDPPRAGMHADVVARLMEIEAEKI
VYVSCNPATQARDMLVLNEKYDVVKIQPVDMFPHTQHVENVLLLKLKK
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtacgccccgctaacgccgtttttgaaaatgtaaacattattgacattgccgaa
gaaggcaaaggtgtaggcaagactgacgacctggtgcttttcattgaaaaggccgtgccg
ggtgacattgttgatgttgaagtttatcgcaaaaagaaaaactttggcgaggctaagata
atccatctaaaacaactttctgcgtatcgtaccgagcccttctgcgaacactttggcact
tgcggcggctgcaaatggcaacacatgacctatgaagcccagctgcaattcaaacaaaaa
tctgttgctgatgcattaagccgcctggccaaattggatgtaagcaatatgctgcccatt
gtgccgtctccgcacgacaggtattatcgtaacaaactcgagtttaccttctctgataaa
cgctggctgtacgatggcgagaaccgcgagtctgagacgctggacatgaatgccctgggt
tttcacatccccggcaggtttgacaagatccttgatgttaaacactgctatttgcaggaa
gacccatcgaacgatctgcgcaacgccattcgcgattttgcgaaagagcacaacataagc
ttctacaatttaaagcaccacgaaggcgcgcttcgtaaccttatcatccgcacatcgtcg
agcggagaactgatggtgatcgttgttttcgcatacccggaagaaggacaagttgagttg
ttgatggaatatgtgcaaaggcatttcccgcagatcacgtccttgctgtatatcatcaat
caaaagaagaacgatactatttttgatcaggaagtaattacctggaatggcccgcaatat
attcacgagggcatggacgaggtgatattccgtatcggtccaaaatccttttaccaaaca
aacgcggtacaggccaaacgcttatacgaaataacccgcgattttgcagagtttaccggt
aacgaattggtttatgacctgtacaccggtgcaggcactattgccaattttattgccaaa
catgtaaataaggtggtgggggtagagtatgtaccctctgctattgaggatgccaagatc
aactctaatattaataatattactaataccgatttctacgcaggcgacatgaaagatgtg
cttgatcaaaactttaccgctacgcacggcaaacccgacgtgatcattacagatccgccc
agggcgggaatgcatgccgatgtggttgcgagactgatggaaattgaggcagaaaagata
gtgtatgtaagctgcaacccggcaacacaagcccgcgatatgctggtactaaatgaaaag
tacgatgtagtaaaaattcagccggtagacatgtttccgcacacacaacacgtggaaaat
gtgttgttattgaaattgaagaaataa
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