Mucilaginibacter ginsenosidivorans: FRZ54_08850
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Entry
FRZ54_08850 CDS
T06123
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mgin
Mucilaginibacter ginsenosidivorans
Brite
KEGG Orthology (KO) [BR:
mgin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mgin03009
]
FRZ54_08850 (rlmD)
Enzymes [BR:
mgin01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FRZ54_08850 (rlmD)
Ribosome biogenesis [BR:
mgin03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FRZ54_08850 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
MTS
PrmA
Methyltransf_2
N6_Mtase
FtsJ
Methyltransf_11
UPF0020
Motif
Other DBs
NCBI-ProteinID:
QEC62689
UniProt:
A0A5B8UUV6
LinkDB
All DBs
Position
complement(1926113..1927531)
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AA seq
472 aa
AA seq
DB search
MNKAANNLFFENVSIIDIAEEGKGVGKADDFVLFVDKAVPGDVADVQVYRRKKNFGEAKI
TQLKKASDFRTGAFCEHFGTCGGCKWQHMTYDAQLKFKQKTVEGALGHLAKIDVSGMLPI
APSPADRYYRNKLEFTFSNKRWLNDGENRTDETPDMDALGFHIPGRFDKILDVQHCYLQA
DPSNDLRNRIRDYAKQQGMSFYNLKHHEGALRNLIIRTSSTGELMVIVVFAYTTQEQIDG
LMGFIDQTFPQITSLLYIVNQKKNDTIFDQEVVAWRGPEYIYEEMIDGNGKTVRFRIGPK
SFYQTNSIQALKLYQITRDFAGFKGDELVYDLYTGAGTIANFIAGQVKEIVGVEYVPSAI
EDAKINSQINNITNTKFYAGDMKDVLNADFVAQHGKPDVIITDPPRAGMHPDVVARLMEI
GAEKIVYVSCNPATQARDLVVLKEKYDVAKIQPVDMFPHTQHVENVVLLVIS
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagctgctaataacctgtttttcgaaaacgtttccattattgatattgccgag
gaaggcaagggcgtgggcaaagccgacgactttgtgctgtttgtagataaggccgtgcct
ggtgatgttgccgacgtgcaggtttaccgccgcaaaaaaaactttggcgaggcaaaaata
acacagcttaaaaaagcatctgattttcgtaccggggctttttgcgaacactttggcacc
tgcgggggctgcaagtggcagcacatgacctacgatgcgcaattaaaattcaaacagaaa
accgttgaaggtgctttgggtcacctggcaaaaattgatgtgagcggcatgctgcctatt
gcgccatcgcctgctgacaggtattaccgtaacaagctggaatttaccttctcaaacaaa
cgctggctgaacgacggcgagaaccgcacggatgaaacgcccgatatggatgcgctgggt
tttcatattcccggcaggtttgataagatactggatgtacagcattgctacctgcaggcc
gacccatcaaacgatctgcgtaaccgcatccgcgactatgccaaacaacagggcatgagc
ttttataatcttaagcatcacgaaggggccttacggaacctgatcatccgcacctcgtca
accggcgaattgatggtgatcgtggtgtttgcttataccacgcaggaacagatagacggg
ctgatggggtttatcgatcagacttttccgcagatcacgtcgctgttatacatcgtcaac
cagaagaaaaacgacaccatcttcgaccaggaggtagtagcctggcgcggaccggaatat
atttacgaggaaatgatagacggcaacggcaaaaccgtgcgttttcgcatcgggccgaaa
tcgttctatcaaaccaattcaatacaggctctaaagctctaccaaataacccgcgacttc
gccgggtttaaaggcgatgagctggtttatgacctgtacaccggcgctggtaccattgcc
aattttatagccggtcaggtgaaggaaattgtcggggttgaatatgtgccttcggcgata
gaggatgcgaagatcaattcgcagatcaacaacatcaccaataccaaattttacgccggc
gatatgaaggatgtgctgaatgctgatttcgtcgcacagcatggcaagccggatgttatc
atcaccgatccgccgcgcgcgggcatgcacccggatgtagtggcaagattgatggagatc
ggggcggaaaagatagtttacgtaagctgcaaccctgccacgcaggcccgcgacctggtt
gtgttgaaggagaaatatgatgtggcgaaaatacagcccgtcgatatgttcccgcatacg
cagcatgtggaaaatgtggtgttgctggtgattagttaa
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