Mucilaginibacter ginsenosidivorans: FRZ54_20325
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Entry
FRZ54_20325 CDS
T06123
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mgin
Mucilaginibacter ginsenosidivorans
Pathway
mgin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRZ54_20325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgin03019
]
FRZ54_20325
03400 DNA repair and recombination proteins [BR:
mgin03400
]
FRZ54_20325
Enzymes [BR:
mgin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FRZ54_20325
Messenger RNA biogenesis [BR:
mgin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FRZ54_20325
DNA repair and recombination proteins [BR:
mgin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FRZ54_20325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
SPEF2_D5
HTH_Crp_2
HTH_24
GUN4_N
NirdL-like_HTH
Motif
Other DBs
NCBI-ProteinID:
QEC64812
UniProt:
A0A5B8V0N3
LinkDB
All DBs
Position
complement(4473137..4475026)
Genome browser
AA seq
629 aa
AA seq
DB search
MTIQETLKHYWGYDNFRPLQEEIIQSVLLGRDTLALLPTGGGKSVCFQVPGLVKEGISIV
VSPLIALMKDQVENLKAKGIPAVSIVTGMGKREIDIALDNCVYNGVKFLYLSPERLLSEL
VRERIRYMNVNLIAVDEAHCISQWGYDFRPPYLHVADLRELHPGVPVLALTATATADVRG
DIQEKLCFKEPNIFQQSFERKNISYVVQHEENKLRKLLDIPRGVKGTGIVYVRSRKEAEE
IAKYYNENHFGADFYHAGLTMEQRSAKQDSWQTGNTRIIVATNAFGMGIDKPDVRFVIHK
DMPESLEAYYQEAGRAGRDGRKAYAVLLYNHADRLKNEKKFESNFPSVDEIKQVYHQFGS
YFHLAYGTGAGVSFDLDLGDFCVRNKLDATKTVNALKFLEQDEYLAFNESVFLPSRFRFE
VMNEQLYNFQVQNQGWDAFIKTLLRSYGGAFENYVRLREFDLARRANLSVQQVIQGLKQL
EDEGILHYLQQTDLPQVTWLQPRLQQNELIINKRYIENRKTVYRNKMEAVFAYAEHSRCR
SQMLLAYFDETAPKCGVCDVCLEEKRRKNKAETAENITAEIVDSLSMEHKNIGELVTTLK
TGTEKERLEAIRLLLDAGKIKTDGEKYYL
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaccatccaggaaacactgaaacactattggggatatgataacttccggccgttgcag
gaggagataattcagtcggttttattggggcgcgatacgttggctttgctgcccacaggc
gggggcaagtcggtctgtttccaggtaccgggcctggtaaaagaggggataagcattgtt
gtttcgccgctcatagccctgatgaaggaccaggtggagaacctgaaggcgaaaggcatt
ccggcggtatccattgtgaccgggatgggcaagcgcgaaatagatattgcgctggacaat
tgtgtttacaatggcgttaaattcctgtacctgtcgcccgagcggttattgtcagaactt
gtgcgcgaacggatcaggtatatgaatgtgaaccttattgccgtagacgaggcgcattgc
atatcgcaatgggggtacgatttcaggccgccgtacctgcatgttgccgacctgcgggaa
ttgcaccccggcgtacccgtacttgcccttaccgcgacagcaactgccgacgtaaggggc
gacatacaggaaaaattatgttttaaagagcccaacatttttcagcaaagcttcgagcgg
aagaatatcagctacgtggttcagcacgaagagaacaagttgcgcaaactgctcgacata
ccacggggtgtaaagggcaccggtattgtttatgtgcgcagccgcaaggaggccgaggaa
atagccaaatattacaacgaaaaccatttcggcgccgacttttatcacgccgggctcacg
atggaacaacgctctgcaaagcaggatagctggcaaacaggcaatacccgcattatcgtg
gcaactaacgctttcggaatggggatagacaagccggatgtccgttttgtgatccacaag
gatatgcccgaaagcctggaagcctattaccaggaagcgggcagggcaggacgcgacggc
cgaaaagcttatgccgtattgctttataaccatgccgaccggctgaaaaacgaaaagaaa
ttcgaatcgaattttccttcggtggatgagatcaaacaggtgtatcatcaattcggcagc
tactttcatttggcctatggtacaggggcaggggtgagctttgacctggacctgggcgat
ttttgcgtccgtaataaacttgatgccaccaaaaccgttaatgcccttaaatttttggag
caggacgaatacctggcgttcaacgagagcgtattcctgccctcgcgtttccggttcgag
gtgatgaacgagcagctttacaatttccaggtacaaaaccagggctgggacgcgttcatc
aaaaccctgctgcgatcatacggcggtgcatttgagaactatgtacggctgcgggagttt
gacctggcccgacgggccaacctgagtgtgcagcaggtgatacaaggcctgaagcaattg
gaggatgaaggtatactgcattacctgcagcaaaccgacctgccccaggttacctggctg
caaccgcgcctgcagcagaatgagttaattattaataaacgttacatcgaaaaccgtaaa
acggtttaccgcaataaaatggaggcggtgtttgcctatgccgaacatagccggtgccgc
agccagatgctgctggcttattttgacgaaaccgcacccaaatgcggcgtatgcgatgtg
tgcctggaggaaaaacgccggaagaataaagccgaaaccgcggaaaatatcaccgctgag
atcgtcgactctttatcgatggagcataagaacatcggcgagctggtgaccacccttaaa
accggcaccgaaaaggagcgcctggaagctatccgcctgctgctggacgcgggaaagatc
aaaactgatggggagaagtattatttgtaa
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