Mucilaginibacter ginsenosidivorans: FRZ54_20460
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Entry
FRZ54_20460 CDS
T06123
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mgin
Mucilaginibacter ginsenosidivorans
Pathway
mgin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRZ54_20460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mgin03021
]
FRZ54_20460
03019 Messenger RNA biogenesis [BR:
mgin03019
]
FRZ54_20460
Transcription machinery [BR:
mgin03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FRZ54_20460
Messenger RNA biogenesis [BR:
mgin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FRZ54_20460
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA_22
NACHT
AAA
OB_RNB
Mor
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
QEC65735
UniProt:
A0A5B8V3Y3
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All DBs
Position
4505330..4506952
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AA seq
540 aa
AA seq
DB search
MNDKLVSELRDIAKSLGIADAEELRKAQLISNIIEQQQLIEVARQQQAIVAQNYSETKPA
AALETAEAAEKPRKRTRTIKSASSKPRVEVPLDDTNLFDEADDETPAADETDDEVSFAPP
VSAEQPDQADPAVKSEEPAAEGRPQKFERRFNNGQNPNQQKNQEAINLDFDNVIVNEGVL
EIMPDGYGFLRSSDYNYLTSPDDIYVSQSQIKLFGLKTGDTVRGSIRPPKEGEKYFPLVR
VEAINGRVPAEVRDRVPFDHLTPLFPSERLELFTDMGNYSTRIMDLFSPIGKGQRGLIVA
QPKTGKTMLLKDVANAIAKNHPEVYLIILLIDERPEEVTDMARSVRAEVVSSTFDEPADR
HVKIANIVLEKAKRMVECGHDVVILLDSITRLARAYNTVAPASGKILSGGVDANALHKPK
RFFGAARNIEDGGSLTIIATALTETGSKMDEVIFEEFKGTGNMELQLDRKLSNKRIFPAI
DITASSTRRDDLLLDRETLQRVWILRNHLADMNSQEAMEFLQSQIRGTKTNEEFLISMNS
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgacaaactcgtgtccgagttgcgtgatattgcaaaaagcttaggtatagctgat
gctgaagagcttagaaaagcacagttgataagcaatataatagaacaacaacaattgata
gaagttgcacgccagcaacaagctatagtagctcagaattattcagaaaccaaaccggcc
gctgccctcgaaactgccgaagctgctgaaaaaccccgtaaaagaacacgtaccattaaa
tcggccagcagcaaaccaagggttgaagtgcccttagatgacaccaacctgtttgacgag
gccgacgacgaaactccggcagctgacgagaccgatgatgaggtttcattcgcaccgccg
gtgtcagcagaacagcccgaccaggccgatcctgctgttaagtctgaagaacctgctgca
gaaggcaggccgcaaaaatttgagcgccgctttaataacgggcaaaaccccaaccaacaa
aaaaaccaggaggctatcaacctcgatttcgacaacgttatcgttaacgaaggtgtgctg
gaaattatgcccgacggctacggttttttaagatcatctgactataactacctcacctct
cccgacgatatttatgtatcgcaatcgcagataaaactttttggcctaaaaaccggcgat
accgttcgcggcagcatacgcccgccgaaagagggtgaaaaatatttcccgctggtacgc
gtggaagccattaacggccgtgtgcctgccgaggttcgtgaccgggttccgttcgatcac
ttaacaccgctgttcccgtccgaaagattagaactgtttaccgatatgggcaactattcg
acccgtatcatggacctgttctcgcctattggtaaaggtcagcgtggtttgatcgtggcg
cagccaaaaaccggcaaaaccatgttgctgaaggatgtagccaatgccattgcaaaaaac
caccccgaagtttacctgatcatcctgctgatagacgaacgccccgaggaagtaaccgac
atggcccgcagtgtacgtgccgaagtggtctcgtcgacatttgacgagcctgccgaccgc
catgtgaagatagcgaacatcgtactggaaaaagctaaacgcatggttgaatgcggacat
gatgtggttatcctgttagactcaattacccgccttgcacgtgcctacaatacggtagcg
cctgcctcgggcaaaatattatcgggcggtgtcgatgccaatgcgttgcacaaaccgaaa
cgtttcttcggtgcagcacgtaacatcgaggatggcggctcgctcaccatcattgcgaca
gcattaactgaaaccggctcgaaaatggacgaggttatctttgaagaattcaagggtacc
ggtaatatggagctccagctcgaccgtaagctgtccaacaaacgtatattccctgccatc
gatattactgcatccagcacacgccgcgacgacctgctgctcgaccgtgaaacgctgcag
cgtgtttggatactgcgcaaccatttggccgacatgaattcccaggaagctatggaattt
ttgcagagccagataagaggcacaaaaaccaacgaagaattcctaatctcgatgaattct
taa
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