Mucilaginibacter ginsenosidivorans: FRZ54_21865
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Entry
FRZ54_21865 CDS
T06123
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mgin
Mucilaginibacter ginsenosidivorans
Pathway
mgin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mgin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FRZ54_21865 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mgin03021
]
FRZ54_21865 (rpoC)
03400 DNA repair and recombination proteins [BR:
mgin03400
]
FRZ54_21865 (rpoC)
Enzymes [BR:
mgin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FRZ54_21865 (rpoC)
Transcription machinery [BR:
mgin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FRZ54_21865 (rpoC)
DNA repair and recombination proteins [BR:
mgin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FRZ54_21865 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QEC65107
UniProt:
A0A5B8V0S1
LinkDB
All DBs
Position
complement(4800980..4805266)
Genome browser
AA seq
1428 aa
AA seq
DB search
MSYKKDNKIKSNFTTITISLASPESILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDLIIYYERYVVIQPGIKEADGISKMDFLTEEEYLDVLDTLPKENQYLDD
KDPQKFVAKMGAEALEELLRRLDLDQQSYDLRHQAANETSQQRKNEALKRLQVVEAFRDA
KTRVENNPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLKLHECGLPKDMAAELFKPFIIRKMIERGVVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLVEGKAIQLHPLTCTAFNADFDGDQM
AVHVPLGNAAILEAQILMLASHNILNPANGTPITVPSQDMVLGLYYITKGRKTDATRTIK
GEGLSFYSAEEVIIAYNEKKLDLHAFIKVKATVKEKDGSLVNKLIDTTVGRVLFNQHVPV
EVGYINELLTKKSLRDIIGEVVKVTGMARAAQFLDDIKELGFQMAFQGGLSFNLKDINIP
AEKVTLIEQASKQVEEVMGNYNMGFITNNERYNQIIDIWTRINNRLTANVMEILSTDNQG
FNSVYMMLDSGARGSKEQIRQLAGMRGLMAKPQKSGSGGEIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVGETDCGTLRGIFTTALKDNEDIVE
PLFDRILGRTSLHDVHDPITNELLVSAGQDIDEDIAKNIENSPLEGIEIRSVLTCESKRG
VCALCYGRNLASGKRVQMGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESQINAR
FEGVIEFENVRTVPFETEEGPVEVVLGRSGEFRILEQGSNKVIMTNNIPYGSYLYVKDGS
KITKGDRICSWDPYNAVIISEFAGVAQFDAVLEGITFREESDEQTGHREKVIIDTRDKTK
NPVIQVADNKGNLIKGYNIPVGAHIAVDEGEKIRTGQVIAKIPRSTGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVTLGGVKRGNREITIESKDGQIKKYLVPLSKHILVQDNDF
IKAGMPLSDGSISPADILAIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQK
VQIEDAGDTRFLEKEAVDGWDFMMENDDIYDKKVVVEPGDSTTLKAGQIVSVRRLRDENS
VLKRKDMKLVEVRDAIAATSSPLLQGITRASLGTKSFISAASFQETTKVLNEAAIAGKKD
NMLGLKENVIVGHLIPSGTGLRVYENIRVGSQEEFDRLMASKTEEVEA
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaaatcaaaagtaactttaccaccattaccatcagcctg
gcttcgcctgaatccatactggagcgttcgagcggtgaagttttaaaaccagaaaccatt
aactacaggacttacaagcctgagcgtgacggtttattctgtgagcgtatttttggtccg
gttaaggattacgagtgccattgcggtaagtacaaacgtatccgttacaagggtatcgtg
tgcgaccgttgcggtgtggaagtgaccgaaaagaaagttcgccgcgagcgcatgggacac
atcaacctggtggttccggttgctcatatctggtatttccgttcgttgccgaacaagata
ggttacctgctgggattaccaaccaaaaaactcgatctgatcatttattatgaaagatat
gtagttatccagccgggtattaaggaggctgacgggatttcgaaaatggacttcctgacg
gaagaagaataccttgacgttttggatacacttccaaaagaaaaccagtacctggatgac
aaggaccctcaaaagtttgttgccaagatgggtgccgaggctttggaagaattgttgagg
cgtttagaccttgatcagcaatcttatgatctgcgtcaccaggctgctaacgaaacttca
cagcaacgtaaaaatgaagctttaaaacgcctccaggtagttgaagctttccgtgacgcg
aaaacacgtgtggagaataatcctgagtggatgatcgttaagatcgttccggttatcccg
cctgaactgcgtccattggtgccactggaaggcggccgtttcgccacttccgatttgaac
gacttgtaccgccgtgttatcatccgtaacaaccgtttgaaaaggttgatcgagatcaaa
gcgcctgaagtgatcctgcgtaacgaaaaacgtatgctgcaggaagccgtggattcgctt
tttgataactcacgtaaagtgaacgcggtgaaaaccgaaggtaaccgtgctttgaaatca
ctttcggacattctgaaaggtaaacaaggccgtttccgtcaaaacttattaggtaaacgt
gtcgattactcggcccgttcggtaattgttgtaggtccaaacctgaaattacacgaatgc
ggtttaccaaaagatatggctgccgagctattcaaaccgttcatcatccgtaagatgatc
gagcgcggtgttgtaaaaactgtaaaatcggctaaaaagatcgttgaccgtaaggacccg
ttggtttgggatattttggaaaacgtattgaagggtcaccctgtattgctaaaccgtgcg
cctacactgcacaggttgggtatccaggctttccagccgaaactggttgaaggtaaagct
atccagctacacccgttaacctgtaccgcgttcaacgccgactttgacggtgaccagatg
gctgtgcacgtaccacttggcaatgccgctattttggaagcccagatattgatgctggca
tcgcacaacatccttaaccctgccaacgggacacctattactgtaccatcgcaggacatg
gtacttggtttgtactacataaccaaaggccgtaaaacagatgctacccgcaccattaag
ggagaaggcttgtcattctattctgcagaagaggttattattgcctacaacgagaagaag
cttgacctgcatgcctttatcaaagttaaagcaactgttaaagaaaaagacggaagtctg
gttaataaactgatcgacactacagttggccgcgtgttatttaaccagcatgttccggtt
gaagtgggttatatcaatgaactgcttacaaaaaaatcattgcgtgatattattggtgag
gtagtgaaggtaacgggtatggcgcgcgctgcccaattcctggatgacattaaggaatta
gggttccagatggcattccagggcggtttgtcgtttaacctgaaagatatcaatatccct
gccgagaaagttacacttatcgaacaagcttctaaacaagtagaagaggtaatgggtaac
tataatatgggtttcattaccaataacgaacgttacaaccagatcatcgatatctggacg
cgtatcaacaaccgtttgactgcaaacgtgatggagatattgtcgacagataaccagggc
ttcaactctgtatatatgatgcttgactcaggcgcgcgtggttcgaaagaacagatacgc
cagcttgcaggtatgcgtggtttgatggccaagccgcagaaatctggctcaggtggtgaa
attatcgagaacccgatcctttcgaactttaaggaaggtttgtcagtgttggaatacttc
atttcaacccacggtgcacgtaaaggtttggctgatacggctttgaaaactgctgatgcc
ggttacctgacccgtcgtttacatgacgtggcgcaggatatgatcgttggtgaaaccgat
tgcggtactttgagaggtatctttaccactgcattgaaagacaacgaagatattgttgaa
ccattgttcgaccgtatccttggacgtacttcattgcatgatgttcatgacccaatcact
aatgaattgttagtatctgccggacaggacatcgacgaagatatcgctaagaatatagaa
aattcgccgcttgaaggtatcgagatacgttcggtattaacgtgtgaaagcaagcgcggc
gtgtgcgcattgtgctatggccgtaaccttgccagcggtaaacgcgtgcaaatgggtgag
gctgtaggtgtaattgcagcacagtctatcggtgagcctggaacacagttaacactgcgt
acattccacgtgggtggtacagcatctaacatcgccgctgaatcgcagatcaatgctcgt
ttcgaaggtgttatcgagttcgaaaacgtacgtaccgtacctttcgaaactgaagaagga
ccggttgaagtggtattgggccgttccggcgagttccgaatacttgagcagggcagcaat
aaagtgatcatgaccaataacattccatatggctcatacctgtatgtgaaggatggcagc
aagatcaccaaaggcgatcgtatttgttcatgggatccatacaacgccgtgatcatttct
gaatttgcaggtgttgcacagttcgacgctgtattggaaggcattactttccgcgaagaa
tcggacgagcagacaggtcaccgcgaaaaagtgatcattgatacccgcgataaaacaaag
aaccctgttatccaggtagccgataataaaggcaacctgataaaaggttataacatccct
gtgggtgcgcacattgcggtagacgaaggtgaaaagatccggaccggccaggttattgcg
aaaatacctcgttcgaccggcaagacccgtgacatcaccggtggtttgccacgtgtaact
gaattattcgaagcacgtaacccatcgaatcctgcggtagtaaccgagattgacggggtg
gtaactttaggtggtgtaaaacgcggtaaccgtgagatcaccattgagtcgaaagacggg
cagatcaagaaataccttgttccgctgtcaaaacacatcctggttcaggataacgacttt
ataaaagcgggcatgccgttgtcagatggctctatatctcctgccgatatcctggctatc
aaaggcccggctgcggtgcaggaatacctggtgaatggtatacaggaagtttaccgtttg
cagggtgtgaagatcaacgacaagcactttgaagttatcgtacaccagatgatgcagaaa
gtacagatcgaggatgccggcgacacccgtttccttgaaaaagaagctgttgacggttgg
gatttcatgatggaaaatgacgacatctacgataagaaagttgttgttgagcccggtgat
tcaaccacgttgaaagcaggccagatcgtttcagttagaaggctccgcgatgagaattcg
gtattgaagcgtaaggacatgaaactcgttgaagtgcgtgatgctatcgccgctacatca
agcccgctgctacaaggtattacccgtgcatcgttaggcaccaagtcgttcatctctgca
gcatccttccaggaaactaccaaagtactgaacgaggcagctattgcaggtaaaaaggac
aacatgcttggcctgaaggaaaacgtgatcgttggtcaccttatcccatccggaacaggt
ttgcgtgtgtacgaaaatatccgcgtaggttcgcaggaagaatttgaccgcctgatggct
tcaaaaactgaagaagttgaagcgtaa
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integrated database retrieval system
