Mucilaginibacter ginsenosidivorax: FSB76_11470
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Entry
FSB76_11470 CDS
T06204
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mgk
Mucilaginibacter ginsenosidivorax
Brite
KEGG Orthology (KO) [BR:
mgk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mgk03009
]
FSB76_11470 (rlmD)
Enzymes [BR:
mgk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FSB76_11470 (rlmD)
Ribosome biogenesis [BR:
mgk03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FSB76_11470 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_25
MTS
PrmA
NT5C
Motif
Other DBs
NCBI-ProteinID:
QEC76537
UniProt:
A0A5B8VY59
LinkDB
All DBs
Position
complement(2762773..2764182)
Genome browser
AA seq
469 aa
AA seq
DB search
MMNKVAKQKFFEDVRIIDIAEEGKGVGKTDDFVLFVDKAIPGDVVDVQLYKSKKNFGEGK
IFNLKQASEYRTTPFCEHFGTCGGCKWQHMTYDAQLKFKQKSVADALGRIAKINVDGIMD
IIPSPADRYYRNKLEYTFSDKRWLYDGENKEDEALNMNALGFHIPGRFDKILDVKHCYLQ
AEPSNSLRNSIRDFVIEQGYSFYNLRNHEGALRNLIVRTSSTGEIMVIVVFAYAEQEEVD
KLMNFIDAGFPEITSLLYIINQKKNDTIFDQDVIAFKGPEYIHEEMNGIKFRIGPKSFYQ
TNSIQALRLYEITRDFAGFTGNELVYDLYTGAGTIANFIAGSVKEVVGVEYVPTAIEDAK
VNSAINNITNTKFYAGDMKDVLVASFVTEHGKPDVIITDPPRAGMHPDVVARLMEIEAPK
IVYVSCNAATQARDLLVLKEKYDIVKIQPVDMFPHTQHVENVVLLVLRG
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
ctgatgaataaagttgcaaaacagaagttttttgaagacgttcggataatagatattgcc
gaagaaggaaaaggcgtgggcaaaaccgacgactttgtgctttttgttgataaagccata
cccggcgatgttgtagatgtacagctttataaaagcaaaaagaattttggcgaaggcaaa
atttttaacctgaagcaagcttctgaataccgtaccacaccattttgcgagcactttggt
acctgtggcggctgcaaatggcagcacatgacctacgacgcccaacttaaattcaaacaa
aaatctgttgccgatgcccttggccgtatagccaaaattaatgtagatggcatcatggat
atcatcccttcgccggcggatagatattaccgcaataaactggaatatacctttagcgat
aaacgctggctatatgatggcgagaacaaagaagatgaagccctgaacatgaatgccctt
ggttttcatatcccgggtcggtttgataaaattttggatgtaaagcactgctacctgcag
gccgagccatcaaatagtctgcgcaacagcatccgcgattttgtgattgagcaggggtat
tcattttataacctgcgtaaccacgaaggcgcattacgcaacctgattgtacgcacatca
tctaccggcgagatcatggttattgtggtatttgcttacgcggaacaggaagaggtggat
aagctgatgaattttattgatgccggtttcccggaaataacatcgttattatacattatc
aaccaaaaaaagaacgataccatttttgaccaggatgtaatagcctttaaaggccccgaa
tacattcatgaggaaatgaatggcatcaaattccgtataggcccaaaatcgttttaccaa
accaacagcatccaggcgctgcgcctttacgagataacccgcgattttgcaggctttacc
ggtaatgagctggtttatgacctgtacacaggtgcgggtaccattgccaattttatagcg
ggcagcgtaaaagaagtggtaggggtagagtatgtgcccactgccatcgaggatgctaaa
gtaaactcggctattaacaatatcaccaataccaaattttacgcgggtgatatgaaagat
gtattggttgccagttttgtaactgagcacggcaagccggatgtgatcattaccgacccg
ccacgtgctggtatgcaccctgatgtggttgcccgccttatggaaattgaagcgcctaaa
attgtttatgtaagctgtaacgcagctacccaggcccgcgatttgctggtattaaaagaa
aagtacgatatcgtaaaaatacaacccgtagatatgtttccacatacacagcatgtggaa
aatgtggtgttattggtgttaaggggttaa
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