Mucilaginibacter ginsenosidivorax: FSB76_22865
Help
Entry
FSB76_22865 CDS
T06204
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mgk
Mucilaginibacter ginsenosidivorax
Pathway
mgk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSB76_22865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgk03019
]
FSB76_22865
Enzymes [BR:
mgk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FSB76_22865
Messenger RNA biogenesis [BR:
mgk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FSB76_22865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
AAA_19
ERCC3_RAD25_C
Cas3-like_C_2
P-loop_SecA
DsrH
Motif
Other DBs
NCBI-ProteinID:
QEC78647
UniProt:
A0A5B8W5D1
LinkDB
All DBs
Position
complement(5486112..5487458)
Genome browser
AA seq
448 aa
AA seq
DB search
MSFENLKLIEPILKALKTEGYTTPTPIQAQAIPIVLNHRDLLGCAQTGTGKTAAFALPTL
QLLFQDRMAHKEQKAIKALVLTPTRELAIQIAESFTAYGKHTGLKNLVIFGGVSQNPQVD
ALRRGVDILIATPGRLLDLMNQRFVHLDQVRMLILDEADRMLDMGFVNDVKKIIAKVPSK
RQTLFFSATMPAEITSLANTILTNPERIEVTPVSSTADTIQQALYYVEKNDKKSLLIHIL
KDKGIKTALVFTRTKHGADKVVKDLNKVGITAEAIHGNKSQNARQRALTNFKNRTTRVLI
ATDIAARGIDIDELTHVVNYELPNIPETYVHRIGRTGRAGADGIAMSFCDSEEILFLRDI
HKLIGKEIPVEEGHPYPMSPVAMAANLVAGQSKKGSGSFKREGGRGGSGRKPSGGGGRPA
GGGGSRSGGGKSGGGSGMSGASRSSGRR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgaaaatttaaaattaattgagcctatcctcaaggccttaaaaaccgaggga
tatacaacacctactcctatccaggcgcaagccattcctattgtattaaatcaccgcgac
ttattgggttgcgcacaaacaggtacgggcaaaacagcggcctttgcgctgcctactttg
cagttactgttccaggacaggatggcccacaaagagcaaaaagctataaaagccctggtg
cttaccccaacccgcgaactggctatccagattgccgaaagctttacagcatatggtaaa
cataccggcttaaaaaacctggttatatttggtggtgtatcacaaaacccgcaggttgat
gccttacgccgtggcgttgatattttgatagcaaccccgggccgtttactggatttaatg
aaccagcgctttgtacaccttgaccaggttaggatgctgatactggacgaagccgaccgc
atgctggatatgggctttgtaaatgatgttaaaaagatcatcgccaaagtaccatcaaaa
aggcaaacgctgtttttctcggctaccatgcctgccgaaataacatcattagccaatacc
atcttaaccaatcctgaacggattgaagtaaccccggtatcgtctacagccgacactata
caacaggccttatattatgtagaaaagaatgataaaaaatcattgctgatccacatcctg
aaagataaaggaattaaaaccgccctggtatttacacgtaccaagcacggcgccgataag
gttgtaaaagatttgaataaagtaggcatcactgccgaggccattcacggcaataaatcg
caaaacgcgcgtcagcgggctttaaccaactttaaaaaccgtactacccgcgtgcttata
gctactgatattgctgcccgtggtattgatattgacgagcttacccacgttgtaaactac
gagttgcctaacatacccgaaacttatgtacaccgtataggtcgtacaggccgggccggc
gccgacggcatagccatgtcgttctgcgattcggaagagatcctgtttttacgcgacatc
cataaactgataggaaaagaaatccctgttgaggaaggtcacccttaccctatgagcccc
gtggctatggctgcaaacttagtggcaggccaatcaaaaaaaggctcaggcagctttaaa
cgcgaaggcggccgtggcggtagtggccgcaaaccttcgggtggcggcggcagaccagcc
ggaggaggcggcagtcgttccggcggcggcaaatcaggtggcggcagcggcatgagtggg
gcaagcagatcgtcgggtagaagatag
DBGET
integrated database retrieval system
