Magnetococcus marinus: Mmc1_0841
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Entry
Mmc1_0841 CDS
T00427
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mgm
Magnetococcus marinus
Pathway
mgm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mgm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Mmc1_0841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mgm03021
]
Mmc1_0841
03400 DNA repair and recombination proteins [BR:
mgm03400
]
Mmc1_0841
Enzymes [BR:
mgm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Mmc1_0841
Transcription machinery [BR:
mgm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Mmc1_0841
DNA repair and recombination proteins [BR:
mgm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Mmc1_0841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ABK43360
UniProt:
A0L5W7
LinkDB
All DBs
Position
1046510..1050748
Genome browser
AA seq
1412 aa
AA seq
DB search
MTPVSDAPATPSSEISAAGQSVFKLFSRPMLGQSFDGIRISIASPEKIRSWSFGEVKKPE
TINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKRLKHRGVVCEKCGVEVIQSKVRRERM
GHIELAAPVAHIWFLKSLPSRIGLLLDMTLKDLERVLYFENFVVLESGMTPMKRGELLTE
DRYYQLIEEFGDEFRAGIGAEAIREMLVDLKIPEEINQLRDELRDTSSEARRKKIVKRLH
TLEAFQDSKNSPEWMILEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL
FELKAPDIIIRNEKRMLQESVDALFDNGRRGRVITGTNKRPLKSLSEMLKGKQGRFRLNL
LGKRVDYSGRSVIVVGPELKLHECGLPKKMALELFKPFIYNRLEERGLATTIKAAKRMVE
KEKGEVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLVCTAFNADFD
GDQMAVHVPLSIEAQIEARVLMMSTNNILSPANGKPIIVPTQDIILGLYYMTSERANVAG
EGMIFSNTMEVKQAFDAGVANLHASIQCRFRGKRVHTTVGRMLLADMLPERIDFQAINKL
ITKKEVTKLIDHTYRMCGTKDTVIFTDRLMAMGFAFACRAGISFGKDDMVIPEAKRKLVD
AAQEKVKEIEKQYTDGLITEGEKYNKVVDIWSHCTERVADEMMGTISTDTVLNKDGEMVE
QPSFNSIFMMANSGARGSAAQMRQLAGMRGLMAKPSGEIMETPITANFREGLTVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVAQDCIVREEDCGTSIGITVAALVEGNDVVETL
GDRLLGRTPVSDIKDPITDELLVKAGTIMDEDIVEKIENSNVDSVLIRSPLTCETTRGVC
VTCYGRDLARGTRVTVGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRQAEQSHQETTHG
GVLKFHDLITVQDRAGRYVVLSRNSEVSLHEAVEHEGQVEAGRERERYRIPYGARISSAP
GSVVEKGTTFAEWDPFAMPIITEVEGIVKFGDLVDGVSLRENMDDTTGLISKEVTEWKGQ
SSKKGDMRPRITLKDVNSNETLMMPNGSECRYYLPVGAVIVVNEGDHVHGGDIIAKVLRQ
STKNRDITGGLPRVVELFEARKPKEHSFIAENEGMVTYGKDLKGKRRLVVTPDSGEPMEY
LLPKGKQLAVNEGDWVRKGEPLMEGSPVPQDILKVLGLEELCRFMVNEIQEVYRLQGVRI
NDKHIEVIVRQMLQKVQITDPGDTMFVSGEQVEKDDYLLENVKTDKRGGRVATCTPLLLG
ITKASLSTPSFISAASFQETTRVLTEAAISGRVDTLNGLKENVIVGRLIPAGTGNILSQL
KKMGSLTKGEKSTQGGEQHVAKVASSSEVTEG
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgacaccggttagcgatgcgcctgcaacacctagctcggaaatttctgcggctgggcag
agcgtttttaagctgttctcccggcctatgctggggcagagcttcgatggtatccgtatc
tcgattgcttcacctgagaagattcgttcttggtcttttggcgaagtaaaaaagccagag
accatcaactatcgtacctttaagccggagcgcgatggtcttttttgtgccaaaatcttt
ggccccgtaaaagattatgagtgtctgtgtggcaagtataagcgtctcaaacaccgtggt
gtggtgtgtgaaaagtgcggcgttgaggtgatccaatccaaagtgcgccgtgagcgcatg
ggtcacattgaactggccgcgcctgtggcgcacatctggttcctcaaatccctgcccagc
cggattggtctgctgttggatatgaccttgaaggatctggagcgggttctctactttgag
aactttgtggtactagagagtggcatgacccccatgaagcgcggggagctgctgaccgaa
gaccgctactaccagcttatagaagagtttggtgacgagttccgcgccggtattggtgcc
gaagccatccgcgaaatgttggtggatctcaaaatacccgaagagatcaatcaactgcgg
gacgaactgcgtgataccagttccgaagcgcgtcgtaaaaagattgtcaaacggttgcat
accctggaggcctttcaggattccaaaaactcacctgagtggatgattttggaggtgatt
ccggttatcccccccgagctgcgccccttggtgccgctggatggtgggcgttttgcgacc
tccgatttgaacgatctctaccgtcgcgtgatcaaccgtaacaaccgcctcaagcgcctg
tttgagctcaaggcaccggatattatcatccgcaatgaaaagcgtatgttgcaggagtca
gtggacgccctgtttgataatggtcgtcgtggtcgtgtgattaccggcaccaataagcga
ccgctgaaatccttatccgagatgctcaagggtaagcagggccgtttccgcttgaacttg
ctgggtaagcgggtcgactattcgggtcgttccgtgatcgtggtgggtcctgagcttaaa
ttgcacgagtgcggcttgcccaaaaagatggcgctggaactgttcaaacccttcatctac
aaccgtctcgaagagcgtggcctagccaccaccatcaaggcggccaagcgtatggtggaa
aaagagaagggggaagtgtgggatattttggaagaggtgatccgggaacacccggttatg
ctcaaccgcgcacccaccctgcaccgtttgggtattcaagcctttgaacctaaactggtg
gaaggcaaggccattcagttgcacccgctggtgtgtaccgcttttaacgccgactttgac
ggtgaccaaatggcggtacacgtgcccctctccattgaggcacaaattgaagcgcgggtg
ttgatgatgtccaccaacaacatcctctctcccgccaacggtaagccgattattgtgccg
acgcaggatatcattctgggtctctactatatgacctcagagcgggccaatgtggctggc
gagggtatgatcttcagcaatacgatggaggttaaacaggcctttgatgctggggttgct
aacctgcatgcttccatccagtgtcgtttccggggtaagcgggtgcataccacggtgggt
cgtatgttgttggccgatatgctgccagaacggattgatttccaggcgattaacaagctt
atcaccaaaaaagaggtgaccaagctgatcgaccatacctaccgtatgtgtggtactaaa
gatacggtaatctttaccgatcgtctgatggctatgggctttgccttcgcctgtcgggcc
ggtatctctttcggtaaagatgacatggttattcctgaagccaagcgtaagttggtcgac
gctgcccaggagaaggtgaaagagattgaaaagcagtacactgacggtctgatcaccgag
ggtgaaaaatataacaaggtggtggatatctggtcgcactgcacggagcgggtggccgat
gagatgatgggtaccatctctaccgatacggtcttgaacaaagatggcgaaatggtggag
caaccctcctttaactccatctttatgatggccaactccggcgcccggggttcagccgcg
cagatgcgtcagttggcgggtatgcgtggtctgatggcaaaaccatcgggtgagatcatg
gagacccccatcacggcaaacttccgtgaggggttgacggttcttcagtactttatctct
acccacggtgcccgtaagggtctggccgataccgctttgaagacggccaactccggttat
ctaacccgccgtttggtggacgtggcgcaggattgtattgtccgtgaagaggattgcggt
acctctatcggcatcaccgtggcggcactggtggaaggtaatgatgtggtagaaaccctg
ggcgaccgtctgttgggtcgtaccccggtgagtgatatcaaggatcccatcaccgatgag
ctgctggttaaagcaggcaccatcatggatgaggatatcgttgagaagatcgaaaactcc
aatgtggactcggtgctgattcgttcaccactaacctgcgagaccactcgcggcgtttgt
gtcacctgctatggtcgtgatctggcgcgtggtacccgcgtgacggtaggtgaagcggtt
ggggtgatcgcggcacaatctattggtgagcccggtacccagttgaccatgcgtaccttc
cacatcggtggtacggcatcccgtcaagcggaacagtctcaccaagagaccacccatggt
ggtgtgctcaagtttcatgacctgattacggtgcaggatcgtgcgggtcggtatgtggtg
ctctctcgcaacagtgaggtctctttacacgaagcggttgagcatgagggtcaggttgaa
gcgggtcgtgagcgcgagcgttaccgtattccctacggcgcgcgtatctctagtgcaccg
ggctcggtggtggagaagggcacgacctttgctgagtgggatcccttcgccatgcccatt
atcacggaggtagaggggatcgttaagtttggcgatctggtggatggtgtctccttgcgg
gaaaacatggatgataccaccggcttgatctccaaagaggtgacagagtggaagggtcaa
agctccaagaagggtgatatgcgtccccgtattaccctgaaggatgtgaacagcaatgag
acgctgatgatgcccaatggtagcgaatgccgctattatctgccggttggcgccgtgatt
gtcgtcaacgagggggatcatgtacatggcggtgatatcattgctaaggtgttgcgtcag
tcgactaaaaaccgcgacattactggtggtttgccacgggtcgtggagctgtttgaggcc
cgtaagcctaaagagcactccttcattgcggaaaatgagggtatggtcacctatggtaag
gatctcaaaggtaagcgtcgtttggtggtgacacccgatagtggcgagcctatggagtat
ctgttgcctaagggtaagcagcttgcggtgaacgagggcgactgggtgcgtaagggcgaa
cccttgatggagggctcaccggtacctcaggacattctcaaggtgttgggcttggaagag
ttgtgccgctttatggtcaacgaaattcaagaggtctaccggttgcaaggtgtgcgtatc
aacgataagcacattgaggtgatcgttcgccaaatgttgcagaaggtgcagattaccgat
ccgggtgacaccatgtttgtcagtggtgagcaggtagaaaaagatgactacctgttggag
aacgtcaagaccgataagcgcggtggtcgtgtggcgacctgtacaccgctactgctgggc
attaccaaggcctcgctctctaccccttctttcatctcggcggcctccttccaggagacc
acacgggtgctgactgaagcggcgatctccggtcgtgtggataccctcaatggcttaaaa
gagaatgtcattgtgggacgtctgatccctgctggtacggggaatattttgtcgcagttg
aaaaagatgggcagtttgaccaaaggagaaaaatctactcaaggtggcgagcaacacgtt
gccaaggtagccagctccagtgaagttactgaaggataa
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