Magnetococcus marinus: Mmc1_1616
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Entry
Mmc1_1616 CDS
T00427
Name
(GenBank) beta-lactamase domain protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mgm
Magnetococcus marinus
Pathway
mgm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mmc1_1616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgm03019
]
Mmc1_1616
Messenger RNA biogenesis [BR:
mgm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mmc1_1616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ABK44125
UniProt:
A0L832
LinkDB
All DBs
Position
complement(2002818..2004497)
Genome browser
AA seq
559 aa
AA seq
DB search
MTSSTEGSVRILPLGGLGEIGMNLMVYECQGKLLVFDTGLTFPSPDTPGVDVIIPDIRWL
EERKQDVVGIILTHGHEDHIGALPYVWPRLESPIFGTAFTLGLVKMKFKEHDLSTATIRE
VRHREAFQVGPFNLIFIHVTHSIVDASAVAIRTPIGTLLHSGDFKFDHTPVNGLTSDLFS
LAKLGEEGVLALLSDSTNVDRSGSSRSESSVRPALDEQMARAQGLVVCATFSSNIHRIQQ
IVDSAIAHGRKVVLNGRSMEANVGVARELGFIRLDGDDLVTVKSIKNHERHRLCIISTGS
QGEPNSSLMRIAHQEHRDIILGAGDMVILSSKFIPGNERAIWSLINLLYERGVEVVHEKD
NPHIHVSGHAPADDLKTMLALTKPRFFIPMHGEPRHLHLHRKLALAMGVAEERSLVMENG
DLVELTPNHISIIDRVEHGRVFVDGKGVGDICDIVMRDRRHLSEDGMVVVVMVVAKDGGQ
LLEGPEILTRGVIHEDENPQMLEEMRETVAQALAIGAKGMDFNEDEQVGASDIAVRALRR
FFKKRLGRRPVVLPMVMEM
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcagcactgaaggatctgtacgcattttacccttaggtgggctgggtgagatc
ggcatgaacctgatggtctatgagtgccagggaaaattgctggtttttgataccggttta
acctttccctcaccagacacccccggtgtggatgtgattattcccgatattcgctggttg
gaagagcgtaaacaggatgtggtgggcattatccttacccatgggcacgaagatcatatt
ggtgccctgccctatgtgtggccccgtctagagtcccccatctttggcacagcctttacc
ctggggctggtcaagatgaaatttaaggagcatgacctctccaccgccaccattcgcgag
gtacgccatcgcgaggcctttcaagtaggtccttttaacctaatctttattcatgttacc
cactccattgtggacgcctcggcggtggccattcgcacccccattggtacccttttgcat
agtggtgattttaagtttgatcacacgccggtcaacggtttgaccagcgatctgttcagc
cttgccaagttgggggaagagggggttttggccctgctctccgactccaccaacgtggac
cgcagcggctcgtctcggtccgagagcagtgtgcgccccgccctggatgaacagatggcc
cgcgcccaaggtttggtggtgtgtgcaacgtttagctctaacatccatcgtatccaacaa
attgttgactcggccattgcccatggtcgcaaggtggtgctcaatggccgctccatggag
gccaatgttggggtggcccgtgagctgggttttatccggctggatggggatgatctggtc
acggtcaaaagcattaagaaccatgaacgccatcggctttgcatcatcagcacgggcagc
caaggggagcccaactcctccttgatgcgcattgcccaccaagagcatcgggatattatc
ttgggggctggggatatggtcattctctcttccaagtttattccgggcaatgagcgggcg
atttggagcttgattaacctgctctatgagcggggtgttgaggttgtgcatgaaaaggac
aacccccacattcacgtctctggtcatgccccagcggatgatttaaaaaccatgctggcg
ctgaccaaaccacgtttttttattccaatgcatggcgaaccccgccatctacacctgcat
cgcaaactggccttggcaatgggtgtagctgaggagcgctctttggtcatggaaaacggt
gatctggtggagctaacccccaaccatatcagcattatcgaccgggttgagcatggccgg
gtgtttgtggatggtaaaggggttggcgatatttgtgatattgtgatgcgggatcggcgc
catctttccgaggatggcatggtggtggtggtgatggtggtggctaaagatggcgggcaa
ctgctggaggggccagaaatcctcacccgtggggtgatccatgaagatgaaaatccccag
atgttggaagaaatgcgcgaaacggttgcacaggcccttgctattggggccaaaggcatg
gattttaatgaggatgaacaggtaggcgctagtgatatcgcagtacgtgcgttacggcgc
tttttcaaaaaacggctaggacgccgaccggtggttctccctatggtgatggagatgtag
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