Magnetococcus marinus: Mmc1_3380
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Entry
Mmc1_3380 CDS
T00427
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mgm
Magnetococcus marinus
Pathway
mgm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Mmc1_3380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgm03400
]
Mmc1_3380
Enzymes [BR:
mgm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Mmc1_3380
DNA repair and recombination proteins [BR:
mgm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Mmc1_3380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
UvrD_C_2
OB_YrrC
SH3_13
AAA_11
Viral_helicase1
AAA_22
nSTAND3
DEAD
HHH_5
NPHP3_N
HHH_2
AAA_16
Helicase_RecD
PIF1
PhoH
UvrD-helicase
AAA_18
SLFN-g3_helicase
TsaE
RsgA_GTPase
AAA
NTPase_1
AAA_14
ABC_tran
DnaB_C
Zeta_toxin
AAA_28
Motif
Other DBs
NCBI-ProteinID:
ABK45866
UniProt:
A0LD23
LinkDB
All DBs
Position
complement(4210440..4212668)
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AA seq
742 aa
AA seq
DB search
MSGNPLEQGEGVESFCGRIKQVVFHNLENGYAVMVVRPDEAPEETQTVVGVLAAPAAEMR
LCFHGQWESNAKFGRQFKAERMEPLGTTLREAIVLFLQSGSIKGIGKTMANRLVERFGEA
LFEVMDERPEALLEVRGVGKANHGRILKNWQKARDDAQLMLLLYQLGFGAALTRAVSKCL
READPQADPLKMVQENPYLLAQVRGITFQRADAAALQLGMQRLDPRRIEAGMQEILIQLA
NNEGHTLLEEPRFHQQLTVLLALQGHQDQLNLVPMVLERLDLGQGPLVRVYGRDGSPFVQ
LTRYHDYEKQIAYHISRLHGPSPIETISDGWIERVSRGHFSLSVDQRQALKTITQDKVAI
LTGGPGMGKTTITRYVIEHAVENKQTVKLCAPTGRAAKQLAEATGEVALTIHRLMGKGSD
ESVDGQRKFECDLLVVDESSMMDEWMASSLLQMLPDHCRLLLVGDADQLPSVAAGRVLQD
LIQSGVVPVARLTEVHRQAEGSGIALGAVEILHGRRPQMARDFKFVAVTGGMEHLHQCAN
RMLEGIDKMMRVGGIDGAEIQVITPMHGTEVGVKALNERLHEQLNPYQAGQEVLELDGFA
YRAGCRIMQTKNDYDLELFNGDQGEIVEISKDAQGELQVIAKFDEAQKLLDREQMGNIVP
CYAITVHKSQGGQFNYVVTPVVTAHGKMLYRNLFYTCVTRARKGVVLVGSYEALVMAISY
KENMQRNTGLLSRIEERMGGAV
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
gtgagtggcaatcctttagagcagggagagggtgtggagagcttttgtgggcgtattaaa
caggtggtcttccataatctggaaaacggttatgcggtgatggtggtgcgcccggatgag
gccccggaggagacccagacggtggtgggggtgttggcggccccggcggcggagatgcgc
ttgtgttttcatggccaatgggagagcaacgccaagtttggtcggcaatttaaggccgag
cgcatggagcccctggggaccaccctgcgggaggctattgtactgtttttgcagagtggc
tccatcaagggcattggcaagaccatggccaaccgcttggtcgagcggtttggtgaagcg
ctgtttgaggtgatggatgagcgtcccgaagcgctgctggaggtgcgtggggtgggtaag
gccaaccatgggcgtatcttaaaaaattggcaaaaagcacgggacgatgcccaactgatg
ctgttgctctatcaactgggttttggtgcggctttgacccgcgcggtcagtaaatgcctg
cgggaagccgatccccaagccgaccccctcaagatggtgcaagagaacccctatctgttg
gcgcaggtgcggggcatcacctttcagcgggccgatgccgccgctctgcaattagggatg
cagcgtttggacccgcgccgtattgaggcgggtatgcaggagattttaatacaattggcc
aataatgaggggcacaccctgctagaagagccccgttttcaccaacagctaacggttttg
ttggccttacaggggcaccaggatcagctcaatttggtgcccatggtgttggagcgtttg
gatcttggtcaggggccgttggtgcgggtatatggtcgggatggcagcccttttgtgcag
cttacccgttaccatgactatgaaaaacagattgcttaccatatcagccgtttgcacggg
ccaagccccattgagaccattagcgatggctggattgagcgggtgagtcgcggccatttt
agcctctcagtggatcagcgtcaggcgctcaagaccattacccaggacaaggtcgccatt
ttaaccggtggtcctggcatgggtaagaccaccatcacccgctatgtcattgagcatgcc
gtagaaaacaagcaaacggttaagctgtgcgcccccacggggcgggcggccaagcagttg
gccgaggctaccggggaggtggctttgaccatccaccgtttaatgggcaagggcagtgat
gagtctgtggatggtcagcgtaagtttgagtgtgatctgctggtggtggatgagagctcc
atgatggatgagtggatggccagttcactgctacagatgttaccggaccactgccgcctg
ttattggtgggggatgccgatcagctaccgtcggttgcagcggggcgtgtgttgcaggat
ttaattcagagtggggtggtgccggtggcgcgcttgacagaggtacaccggcaggcggag
ggttcgggtatcgccttgggggcggtggagattttgcatgggcggcgtccacagatggcg
cgggattttaaatttgtggcggttacgggcggcatggagcatcttcatcagtgtgccaat
cgtatgctggagggcatagacaagatgatgcgcgtggggggcattgatggggcggagatc
caggtgattactcccatgcatggtaccgaggtgggggtaaaggcgctgaacgagcggctc
catgagcagctcaacccctatcaggcggggcaggaggtgttggagttggacggctttgcc
tatcgggcgggttgccgcattatgcagaccaagaatgattatgatctggagctgtttaat
ggggaccaaggggagattgtggagatcagcaaggatgcccagggggagcttcaggtcatt
gccaaatttgatgaggcgcaaaagctgttggatcgggagcagatgggtaacattgtgccc
tgttacgccattactgtgcataaaagccagggtgggcagtttaactatgtggttacgccg
gtggtaacggcccatggtaagatgctctatcgcaacctgttttatacctgtgtgacgcgg
gcgcgtaagggtgtggtcttggtgggctcttatgaggcgttggtgatggcgatctcctat
aaggagaatatgcagcgcaatacgggtctgttgagccgtatcgaggagcgcatgggtggt
gcagtataa
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