Mycoplasmoides gallisepticum NC96_1596-4-2P: HFMG96NCA_3636
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Entry
HFMG96NCA_3636 CDS
T02328
Symbol
rnr
Name
(GenBank) exoribonuclease R (VacB)
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mgnc
Mycoplasmoides gallisepticum NC96_1596-4-2P
Pathway
mgnc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgnc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HFMG96NCA_3636 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgnc03019
]
HFMG96NCA_3636 (rnr)
03016 Transfer RNA biogenesis [BR:
mgnc03016
]
HFMG96NCA_3636 (rnr)
Enzymes [BR:
mgnc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HFMG96NCA_3636 (rnr)
Messenger RNA biogenesis [BR:
mgnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HFMG96NCA_3636 (rnr)
Transfer RNA biogenesis [BR:
mgnc03016
]
Prokaryotic type
tRNA degradation factors
HFMG96NCA_3636 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
OB_RNB
OB_RNR_1st
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
AFP77548
LinkDB
All DBs
Position
complement(617148..619322)
Genome browser
AA seq
724 aa
AA seq
DB search
MNNNNNRRKIINDILQIVRLEDKKPIPPGIIVKKLDNRYTKTAIYKEIDKMLANGELKKL
ANNKVVLGYQNSAPDLSKIMVGRLAIGTNGNGFIKLENEELSKYYVHNTNLNNALNNDLV
EFAPLTVQNDWYKHDLTDACILKVLERARTRYVGTYEDTGDEYLVLPDDPKLIYKVVLDR
HYLELKEHDRILFEIIEIKQGVIRAALVKNIGSKEDLGIDIDAIAYNHLIEPTFSQEIIN
EAKSLKYELDDHQKEIRKDLRDLSFLTIDPASALDLDDAIYVKKIDDDSYNLKVAIADVC
HYVKFDGPMDRGARTKATSVYLANKVIPMLPEELSNDLCSLNPGVDKFVIVGDLMIDGTG
KIMSHEFYPAIINSHKRFSYEEVNEYFSATNDLKDVDPSIRQMLDEARVLAKILRRMKIK
RGYLQFDVDETSIELDDRFEPINILKKPHGEAQEMIEDFMVAANEAVCLFASKYNLDFIY
RVHPKPAVHKLNSFANWARTLEFEIFGDLNSIKSTDIQKWLTNNADHKQIKLINKLLLRS
MNKAYYSVENTRHFSLASKHYTHFTSPIRRYADNIVHRILWMFVFDPQAYTDLQRNELKS
HLVEWCDLINKQELVAVDCERDVNAFLYVKYMSNFLGNWYHNVTINAITNFGMFVELDNG
IEGLVRLNNINGDYYRYDPNTDSLIGRNNHKKYQIGDTVDVKLLSADKRLKRIDFAIHED
NKCK
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgaacaataacaacaataggcgaaagataattaatgatatcttacagatcgtaagattg
gaagataaaaaaccaatcccaccagggatcattgttaaaaaacttgataataggtacacc
aaaacagcaatctacaaagagattgataagatgttagctaatggtgaattaaagaagtta
gctaataataaggttgtcttaggttatcagaattcagcacctgatctaagtaagatcatg
gtgggaagattagcaatcggaacaaacggtaatggcttcattaagttagaaaatgaagag
ttatctaaatattatgttcataacaccaatcttaataacgctttaaataacgacttagtt
gagtttgcccctttaactgttcaaaacgattgatacaagcatgatctgactgatgcttgt
atcttaaaagtgcttgaacgagctagaactagatatgttggtacttatgaagatacgggt
gatgaatatttagttttacctgatgatcccaaattaatctataaagtcgttttagataga
cattatttagaactaaaagaacacgaccggatcttgtttgagattattgagatcaaacaa
ggtgtgattagagcagctttagttaaaaatatcggatctaaagaagatctagggatcgat
attgatgcgatcgcatacaatcatctgatcgaaccaacctttagtcaagagatcattaat
gaagctaaaagtttaaaatacgaattagatgatcaccaaaaagagatccgtaaagatcta
agagatcttagttttcttacgatcgatccagctagtgcacttgatttagatgatgcgatc
tatgtgaaaaagatcgatgatgatagttacaacttaaaggttgcgatcgctgatgtttgt
cactatgttaaatttgatgggccaatggatcgtggggctagaactaaagcaacatcagtg
tatctggctaataaggtgattccgatgttaccagaagaactatcaaacgatctttgttca
cttaacccaggggttgataagttcgttattgttggtgacctaatgattgatggtactggt
aagatcatgagtcatgagttttaccccgcaatcattaactctcataaacgctttagttat
gaagaagtaaatgagtattttagtgctacaaatgatctaaaagatgttgatccatcaatc
cgtcagatgttagatgaagctagggtgttagctaagatcttaagacggatgaagatcaaa
cgtggttatttacagtttgatgttgatgaaacttcaatcgaattagatgatcgttttgaa
ccgattaatatcttgaaaaaaccacacggtgaagctcaagagatgattgaagatttcatg
gtggcagctaatgaagcagtatgtttatttgctagcaaatacaatttagatttcatctac
agagttcaccccaaaccagcagtccacaaactaaacagttttgctaactgagctagaaca
ctagagtttgagatctttggtgatttaaatagtattaaatcaactgatatccaaaagtgg
ttaactaataatgctgatcacaaacagatcaagttgattaataagctcttattacgctca
atgaataaggcgtactattcagttgaaaacacccgccacttctcgttagcttcaaaacac
tacacccacttcacttcaccaatcagacggtatgctgataatatcgttcaccggatcttg
tggatgtttgtttttgatccacaagcatacaccgatctacaaagaaacgaactaaaatca
cacctagttgaatggtgtgatctaatcaataagcaagagttagtagctgttgattgtgaa
cgtgatgttaatgcgttcttatacgttaagtatatgagtaacttcttgggtaattgatat
cataacgtaacgatcaacgcgatcaccaactttgggatgtttgttgaattagataacggg
attgaaggtttggtaagattaaataatattaacggtgattattaccgttatgatcccaat
actgatagtttaatcggaagaaataaccacaagaaataccagatcggtgatactgttgat
gttaaattattatcagctgataagcgtttaaaacgcattgattttgcgatccacgaagat
aataaatgcaaataa
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