Mycolicibacterium goodii: AFA91_05175
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Entry
AFA91_05175 CDS
T04008
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mgo
Mycolicibacterium goodii
Brite
KEGG Orthology (KO) [BR:
mgo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgo03019
]
AFA91_05175
Enzymes [BR:
mgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AFA91_05175
Messenger RNA biogenesis [BR:
mgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AFA91_05175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
NACHT
T2SSE
nSTAND3
PhoH
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AKS31375
UniProt:
A0A0K0X1P9
LinkDB
All DBs
Position
complement(1064642..1068562)
Genome browser
AA seq
1306 aa
AA seq
DB search
MSERQELRELRARLDGLTIRDAARLGRRLKNLRGADPAKIAEQISAAEALVLTRQAAVPQ
ITYPDLPVTQRRDDIAKAISDNQVVVVAGATGSGKTTQLPKICLDLGRGIRGTIGHTQPR
RLAARTVAQRIADELNTPLGDAVGYTVRFTDQASDATLVKLMTDGILLAEIQRDRRLLRY
DTLILDEAHERSLNIDFLLGYLRELLPRRPDLKVIVTSATIEPERFSRHFDDAPIVEVSG
RTYPVEIRYRPLEVPVRPAEDEDPDDPDHEIVRTEMRDPTEAIVDAVRELEAEPPGDVLV
FLSGEREIRDTAEALKDLRNTEVLPLYARLPTAEQQKVFQPSRSGRRVVLATNVAETSLT
VPGIRYVVDPGTARISRYSRRTKVQRLPIEPISQASAAQRAGRSGRTAPGVCIRLYSEED
FESRPRYTDPEILRTNLAAVILQMSALGLGDIENFPFLDPPDARSIRDGIGLLQELGAFD
SASAAGAGNSTPALTETGRRLARLPLDPRIGRMILQADAEGCVREVLVLAAALSIPDPRE
RPSDREEAARQKHARFADEHSDFISYLNLWNYLREQRSELSGNAFRRTCRDEFLHYLRIR
EWQDLVGQLRSIARDIGIRESDEPADPARIHAALTAGLLSHIGLRDGDGRDYTGARNTKF
VLAPGSVLTKKPPRWVVVADLVETSRLFGRIAARIEPEAVERVAGHLVQRSYSEPHWDAR
RGAVMAFERVTLYGLPLVPRRRVNYAQIDPVVSRELFIRHALVEGDWQTRHHFFRDNARL
REEVEEMEERARRRDLLVGDDEIFALYDARIPADIVSARHFDAWWKKQRHKTPDLLTFTR
EDLLRTEEAAEHPDTWRAGDLELPLSYRYDPGAADDGVTVHVPVGVLARLGGENFAWQVP
ALREELITALIKSLPKDLRRNFVPAPDTARTVLPHLDPAEGSLLDALQRELRRRSGILVP
IDAFDLDKVPAHLRVTFAVESADGAEVARGKDIGALREQLAVPVAQAVAAAVDAVDDGLQ
RKGLRAWPEDLDELPRTVENVSGGHTVRGYPGFVDTGKAVDIRVFPNATERDAAMGPGLR
RLLRLSVPSPVRAIERGLSPRTRLGLNANPDGNLAALLEDCADAAADTLVRQIVWSRAEF
ITLTERAAKELGPTTQAAVSRVEKVLAAAHEVGVALPDKPPAGQADAVEDIRVQLERLLP
KGFVTTTGIARLPDLTRYLTAIARRLERLLHAMGADRERMARVHAVEDAYDDLVRALSQA
RAAAPDVVAIAWQIEELRVSLWAQQLGTPRPVSEQRIYKAIDAVAR
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggaacgtcaggaactgcgtgagctgcgtgcgcgtctcgacggactgaccatccgc
gacgcggcgcggctcgggcgtcggctcaagaatctgcggggcgctgacccggcaaagatc
gccgaacagatatcggcggccgaggcgctggtgctcacccgccaggccgccgtcccgcag
atcacctatcccgacctgccggtcacgcaacgccgcgacgacatcgccaaggccatcagc
gacaaccaggtcgtcgtggtggccggtgccaccggatcgggcaagaccacccagctgccc
aagatctgcctcgacctcggccggggcatccgcggcaccatcggccacacccagccgcgg
cggctggcggcccgcaccgtcgcgcagcgcatcgccgacgagctcaacaccccgctcggt
gacgccgtcggctacaccgtgcggttcaccgaccaggccagtgacgccacgctcgtcaaa
ctcatgaccgacggcatcctgctcgccgagatccagcgcgaccgcaggctgctgcgctac
gacaccctgatcctcgacgaggcccacgagcgcagcctcaacatcgacttcctgctcggc
tatctgcgcgaactgctgccgcgccggcccgacctcaaggtgatcgtcacgtcggcgacc
atcgaaccggagcgtttttcgcgccacttcgacgatgcgccgatcgtcgaggtctccggg
cgcacctatcccgtcgagatccgttaccggccactggaagtccccgtacgaccagccgag
gacgaggatcccgacgatcccgaccacgagatcgtgcgcaccgagatgcgcgatcccacc
gaggcgatcgtcgacgcggtccgcgaactcgaagccgaaccacccggcgacgtgctggtg
ttcctctccggtgagcgtgagatccgcgacaccgcagaggctttgaaagatctccgcaac
accgaggtgctgccgctgtacgcgcggctgccaaccgcggaacagcagaaggttttccag
ccgagccgttcgggtcgacgcgtcgtgctggccaccaacgtcgccgagacctcgctgacc
gtgccgggcatccgctacgtcgtcgacccgggcaccgccaggatctcgcgctacagcagg
cgcaccaaggtgcagcggctacccatcgaacccatctcccaggcctcggcagcgcagcgc
gcgggccgctccgggcgtaccgcgcccggcgtgtgcatccgcctttactccgaagaggac
ttcgaatcccggccccgctacaccgatccggagatcctgcggaccaacctcgccgcggtg
atcctgcagatgagcgcgctcggtctcggcgacatcgagaacttcccgttcctcgacccg
ccggatgcccgcagcatccgcgacggcatcggactgctgcaggaactcggtgcgttcgac
tccgcttccgccgccggtgccggcaattcgaccccggcgctcaccgagaccggacgcagg
ctggcccgcctgccgctcgatccgcgcatcggccggatgatcctgcaggccgacgccgaa
ggctgcgtgcgcgaggtgctggtgctggcggcggcgctgtccatcccggacccgcgtgaa
cgcccgtcggaccgcgaggaggcggcccggcagaagcatgcccgtttcgccgacgagcac
tcggacttcatctcctacctgaacctgtggaactatctgcgggagcagcgaagcgaactg
tccggcaacgccttccggcggacgtgccgcgacgagttcctgcattacctgcggatccgc
gagtggcaggacctggtggggcagctgcgcagcatcgcccgcgacatcggaatccgggag
tccgatgagcccgccgacccggcccgcatccacgccgcgctcaccgcaggcctgttgtcg
cacatcgggcttcgtgacggggacggccgtgactacaccggtgcccgcaacacgaagttc
gtgctcgcgcccgggtcggtgctgacgaagaagccgccgcgctgggtcgtggtggccgac
ctcgtcgagaccagcaggttgttcggccgcatcgcggcgcgcatcgagccggaggcggtc
gaacgcgtcgccgggcacctcgtgcaacgcagctacagcgaaccgcactgggacgccagg
cgcggcgcggtcatggcgttcgagcgcgtgacgctctacggcctgccgctggtcccgcgc
cgccgggtcaactacgcccagatcgatccggtggtcagccgcgaactgttcatccggcac
gccctggtcgagggtgactggcagacccgccaccacttcttccgcgacaacgcgcgactg
cgcgaagaggtcgaggagatggaggagcgggcccggcgtcgcgacctgctggtgggcgac
gacgagatcttcgcgctgtacgacgcgcggatcccggccgacatcgtctcggcccggcac
ttcgacgcgtggtggaagaagcagcgccacaagacacccgacctgctcaccttcacgcgc
gaggacctgctgcgcaccgaggaggccgcggagcaccccgacacctggcgggccggcgac
ctcgaactgcccctgagctaccggtacgacccgggcgccgccgacgacggggtgaccgtg
cacgtgccggtcggtgtgctggcgcgcctcggcggggagaacttcgcctggcaggttccg
gcgctgcgcgaggaactgatcacggcgctcatcaagtcgctgcccaaggacctgcgccgc
aacttcgtgcccgccccggacaccgctcgcacggtcctgccccatctcgaccccgcggag
ggctcactgctcgatgcgttgcagcgcgaactgcgcaggcgcagcggaattctggtgccc
atcgacgccttcgacctcgacaaggtgcctgcgcatctgcgggtgacgttcgcggtcgag
agcgccgacggcgccgaggtggcccgcggcaaggacatcggcgctctgcgtgagcaactc
gcggtgccggtcgcccaggccgttgccgccgcggtcgacgcggtcgatgacggactgcag
cggaagggcctgcgggcgtggccggaggatctcgacgaattgccccgcaccgtggagaac
gtcagcggcgggcacaccgtccgcgggtatccgggcttcgtcgacaccggaaaggccgtc
gacatccgggttttcccgaacgcgaccgaacgcgatgccgccatgggtcccgggctgcgg
cgactgttgcggttgagcgtgccgtcgccggtccgggccatcgagcgcggtctgagccca
cggacccgcctggggctcaacgcgaaccccgacggcaacctcgccgcgctgctggaggac
tgcgccgacgcggccgccgacaccctggtgcgccagatcgtctggagcagggctgaattc
atcacgctcaccgagcgtgcggccaaggaactcggacccaccacgcaggccgcggtgtcc
cgcgtcgagaaggtccttgccgccgcgcacgaggtcggcgtggccctgcccgacaagccg
cctgccgggcaggccgatgcggtcgaggacatccgtgtgcaactggaacggttgctgccc
aagggtttcgtcacgacgaccgggatcgctcggctgcccgatctgacccggtacctcacc
gcgatcgcgcggcggctcgaacggctactgcacgcgatgggcgccgaccgtgagcgcatg
gcccgcgtgcacgcggtggaggacgcctacgacgacctggtccgcgcgctgtcgcaggca
cgcgcggcggcgcccgacgtggtggccatcgcgtggcagatcgaggaactgcgagtgagc
ctgtgggcgcagcaactcggcaccccccgcccggtcagcgagcagcgcatctacaaggcc
atcgacgccgtcgcacgctga
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