Mycolicibacterium goodii: AFA91_13600
Help
Entry
AFA91_13600 CDS
T04008
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mgo
Mycolicibacterium goodii
Pathway
mgo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AFA91_13600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgo03400
]
AFA91_13600
Enzymes [BR:
mgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AFA91_13600
DNA repair and recombination proteins [BR:
mgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AFA91_13600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
LSDAT_prok
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AKS32744
UniProt:
A0A0K0X5S1
LinkDB
All DBs
Position
2877116..2880763
Genome browser
AA seq
1215 aa
AA seq
DB search
MTAPGHTSVQTPIAGLVELALSDPSLQDVIRRAADRPADLALVGPASARVLVAAALARNG
PLLVVAATGREADELTSELRGVFGDSVALFPSWETLPHERLSPGVETVGARLLLLRRLAR
PDDETLGPPLRVVVTTTRSLLQPMAPDLVDIDPVKLAVGAELEFEDVVARLVDLSYTRVD
MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFSIADQRSIPEVPVQTVVAV
PCRELLMTDDVRERAAALAAEHPTSENTVPGTVPDMLAKLSEGIPVDGMEALLPLLHPVE
PTTLTNHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGAS
GFLTFEEARDAAREGGHRWWTLSQLSDESAIELDLRPAPSARGQQHNLDEIFAMLRAHVA
TGGYAAVVTPGVGTAHRVVEQLGEADTAATILEPGAAPKAGVVGVLKGPLCSGVVLPGAN
LVIITEADLTGNRVTASEGKKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVG
GARREYVVLEYASAKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTKAR
RAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKADMEK
PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPV
TVKGLSRFTDPTESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEH
KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV
AAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEGFW
NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP
NKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL
VGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSDRLRLEAYRRLAGAVDD
DAVGSVVEELIDRYGPLPEPAQRLVAVARLRLLCREYGITEIGAVSASTVRLSPVVLADS
AQLRLKRMYPGGHYRATTSTVQVPLPRAGDGVGAPRIRDLELVGWVAGLVLVLNGKGQAD
VDMSKFSNPAGEAKR
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcacacttctgtccagaccccgattgcgggtctcgtcgagctggca
ctgtccgatccgtctctgcaggacgtcattcggcgcgccgccgaccgacccgccgatctg
gcactcgtcggaccggccagcgcacgcgtgctggtcgccgccgcgctcgcccggaacggc
ccgctgctggtggtcgccgccaccggccgtgaggccgacgagctcaccagcgagttgcgc
ggcgtgttcggcgactcggtggcgctgttcccgtcgtgggagacgctgccgcacgagcgg
ctctcacccggcgtcgagaccgttggggcgcggctgctgctgttgcgtcgcctggcccgg
cccgacgacgagaccctcggcccgccgctgcgcgtggtggtcaccacgacgcggtcgctg
ctgcagccgatggctcccgacctcgtcgacatcgacccggtgaaacttgccgtcggcgcc
gagctggagttcgaggacgtggtcgcgcggctcgtcgacctttcttatacgcgcgtcgac
atggtcggcaagcgcggcgagttcgcggtgcgcggcggcatcctcgacgtgttcccgccg
acggccgaacatccggtccgtgtcgagttctggggcgacgagatctcggagatgcgggcg
ttctcgatcgccgaccagcggtccatccccgaggtgccggtgcagaccgtcgtcgcggtg
ccgtgccgtgagttgctgatgaccgacgacgtgcgcgaacgcgccgcggcgctggccgcc
gagcatccgacgtcggagaacaccgtgcccggcacggtgccggacatgctggccaaactg
tccgaaggcatcccggtcgacggcatggaggccctgctgccgctgctgcatccggtcgag
ccgacgacgctgaccaaccatctgcccgagggcgccccggtgctggtgtgcgatccggag
aaggtgcgcacccgtgccgcggacctgatcaagaccggccgcgaattcctcgaggcgtcg
tggtcgacggccgccgtcggcggcgacgccccgatcgatctggaggcgctcggcgcgtcg
gggttcctcacgttcgaggaggcgcgcgacgccgcccgcgagggcgggcaccggtggtgg
acgctgtcgcagctgtccgacgagtcggcgatcgaactcgacctgcggccggccccgtcg
gcgcgcggccagcagcacaacctcgacgagatcttcgcgatgctgcgggcccacgtggcc
accggtgggtacgccgccgtcgtcacccccggcgtcggcaccgcacaccgcgtcgtcgag
caactcggcgaagccgacaccgccgcaacgattctggagcctggcgccgcccccaaggcc
ggtgtggtcggggtgctcaagggcccgttgtgcagcggtgtggtgctgcccggcgccaac
ctggtgatcatcaccgaggccgacctgaccggtaaccgggtgaccgccagtgaaggcaaa
aagcttgccgccaaacggcgtaacgtcgtcgacccgctcgcgctcaccgcgggcgacctg
gtggtgcacgatcagcacggcatcggcaagttcgtcgagatgaccgagcgggtggtcggc
ggcgcgcgccgcgagtacgtcgtgctggagtacgcctcggccaagcgcggtggcggatcg
gaccggctctacgtgccgatggattcgctggatcagctgtcccgctacgtcggcggggag
gcgccgtcgctgtcgcgcctcggcggcagcgactgggcgaacaccaagaccaaggcgcgc
cgcgcggtccgggagatcgccagtgaacttgttgcgctgtacgccaaacgccagtccgcg
ccgggacacgcgttcggcccggacaccccgtggcaggccgagatggaagatgcgttcggg
ttcaccgagaccatcgaccagctgacggccatccaggaggtcaaggccgacatggagaaa
cccgtgccgatggaccgggtgatctgtggcgacgtggggtacggcaagaccgagatcgcg
gtgcgcgcggcgttcaaagccgtgcaggacggcaagcaggtcgcggtgctggtgccgacg
acgctgctggccgaccaacatctgcagaccttcaccaaccgcatggccggcttcccggtg
accgtcaaaggcttgtcgcggttcaccgatcccaccgaatcccgcgccgtgatcgaaggt
ctcaaagacggttcggtggacgtcgtgatcggcacccaccggttgttgcagaccggtgtg
acgtggaaagaccttggcctcatcatcgtcgacgaggagcagcggttcggcgtggagcac
aaagagcacatcaagtcgatgcgcacccacgtcgacgtgctcaccatgagcgccaccccg
atcccgcgcaccctggagatgagcctggcaggcatcagggagatgtcgacgatcctcacc
ccgcccgaggagcgctacccggtgctcacctacgtcggcccgcacgacgacaagcaggtc
gccgccgcgctgcgccgcgaactgctgcgcgacgggcaggcgttctacatccacaaccgg
gtgcgcaccatcgacgaggccgccgcccgggtgcgccagctggtgcccgaggcgcgggtt
gtggtggcgcacggccagatgaacgaggagacgctggaaaagaccgtcgagggtttctgg
aaccgcgaatacgacatcctggtgtgcaccacgatcgtcgagaccggcctggacatctcc
aacgccaacacgctgatcgttgagcgggccgacacgttcggtctgtcccagttgcaccag
ctgcgcggccgggtgggccgcagccgcgagcgtggctatgcctacttcctgtatccgccg
aacaagccgctgaccgagacggcctacgaccgcctggccaccatcgcccagaacaacgaa
ctgggtgccggtatggccgtggcgatgaaggacctggagatccgcggtgcgggcaatgtg
ctcggtgccgagcagtccggccacgtcgcaggcgtcggcttcgacctgtacgtgcgcctg
gtgggggaggccgtcgaggcttaccgagctgcggccgacgggaaaaccgttgccacaccg
caggagcagaaggatgtgaggatcgaccttccggtcgatgcgcatctgccacccgagtac
atcggcagcgaccggctgcgcctggaggcctaccgccggctggccggcgcggtcgacgac
gacgccgtggggtcggtcgtcgaggagctcatcgaccgttacgggccgctgcccgaaccg
gcgcagcgtctggtggccgtcgcccggctgcggctgctgtgccgcgagtacggcatcacc
gagatcggtgcggtgtcggcgtcgacggtgcggttgagcccggtggtgcttgcggattcg
gcgcagttgcggctcaagcggatgtacccgggcgggcactaccgcgccaccacctccacc
gtgcaggtgccgctgccgcgcgccggtgacggtgtcggcgcgccgcgcatccgcgatctc
gaactggtcggttgggtggccggactcgtgctggtgctcaacggaaaaggtcaggccgac
gtggacatgtcgaagttctcgaacccggcgggggaggcgaagcgatga
DBGET
integrated database retrieval system
