Muribaculum gordoncarteri: E7746_00330
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Entry
E7746_00330 CDS
T10108
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mgod Muribaculum gordoncarteri
Pathway
mgod03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mgod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E7746_00330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgod03400
]
E7746_00330 (mfd)
Enzymes [BR:
mgod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E7746_00330 (mfd)
DNA repair and recombination proteins [BR:
mgod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E7746_00330 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QCD34436
UniProt:
A0A4P7VDB0
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All DBs
Position
complement(80077..83421)
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AA seq
1114 aa
AA seq
DB search
MDLKQLCEKILTPGRREAVESAVNDNSCRRISLYGLAGSSAPMLMSALPSRGRPMLVIGD
SLDDAGYLYHDLSRVLGESAVLMFPSGYKRSIKYGQVDPPSQIMRTEVLNHWFDDPSLRY
VVTYPEALAEHVATRDTIEAHTLQLAVGSTVDLAETEKWLRENGFQEVDYVYDPGHFAVR
GSILDIYGYSCEEPFRIDFFGDEIESIRTFNIETQLSESKHDRISITSNVSQQGKGESLL
DYIPADTPLWVRDADYTLQRIEAIATETFSDSALIADEGDKDALKHVVEPDRFAESLNNM
RQIRFSAAANADAEASAAIDFGCTPQGIYHKNFDLISDSLLKFIGDGYTVYILSDSEKQI
ERLRAIFEDRGDDIKFTPVISTIHEGFVDHVTKACIFTDHQIFDRFHKYNLKSDRSRSGK
LALSLKELGQIEVGDYVVHVDHGVGRFGGLIRTEVNGRMQEMIKLVYLNNDILLVSIHSL
HKLAKYRGKEGVEPRINRLGSGAWGKMKERTKSKLKDIARDLIKLYAARKDEKGFAYSPD
SYLQQELEASFIYEDTPDQLTATQAVKNDMESARPMDRLICGDVGFGKTEIAIRAAFKAA
TDNKQTAVLVPTTVLAYQHFNTFKNRLKEFPVRVDYLSRARSAKEVKQIKADLAEGKIDI
LIGTHKLIGKDIKFKDLGLLIVDEEQKFGVAVKEKLKQMKVNVDTLTMSATPIPRTLQFS
LMGARDLSAITTPPANRYPILTSVNAINDDIMLEAVNFEMSRNGQVFIVNHRIEGLYELE
AMINRLVPDARTIVAHGQMPPEKLEKAIIDFANHDYDVLLATTIIESGIDMPNVNTIVIN
NAQNFGLSELHQLRGRVGRSSRKAFCYLLVPPHIPLNPVARRRLQAIESFSELGSGIHIA
MQDLDIRGAGNLLGAEQSGFIADLGYETYQRILKEAVLELKNEEFSDTLTPDDSSDGQEF
VADCVIESDMELLLPPEYVPQESERISLYKELDGIERELDLQQFKLHLEDRFGKIPKETA
ELLRIPRLRYLARRLGIEKVVLKQGSMYIYFVDDNNKAYYQSPMFGRLLNFLQANPRRCR
IREKNGRRSFAIADVPTVEEAVALLNNVLSLETI
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atggacctgaagcagttatgtgaaaagattctcactcccggccggcgtgaagcggtcgag
agtgccgtaaatgacaactcttgccgccgcatttccctgtatggacttgccgggtcatcg
gcaccaatgttaatgtcggccctcccctcccgggggaggccgatgcttgttataggcgat
tcgctcgatgacgccggctacctctatcacgacttgtcacgcgtgcttggcgagagcgcg
gtgctcatgtttccatcgggctacaagaggtcgataaaatacgggcaggtcgacccgccg
tcgcagattatgcgcaccgaagtgctcaaccactggtttgacgacccttcgctgcgctat
gtcgtcacctatcccgaggcacttgccgagcatgtggcgacccgcgacaccatcgaggct
cacaccctgcagcttgccgtaggctccaccgttgacctcgccgaaaccgagaagtggctt
cgtgaaaatggattccaggaggttgactacgtgtacgaccccggccatttcgcagtccgc
ggctccattctcgacatctacggctacagttgcgaagagcctttccgcatcgactttttc
ggcgacgaaatcgagtcgatacgcacattcaacatcgaaacacagctctcggagtcaaag
cacgaccgcatatcgattacatccaatgtctcacagcagggcaaaggcgagtcgcttctt
gactacattcctgccgacacaccgctgtgggtgcgcgatgccgactataccttgcagcgc
atcgaggctattgcaactgaaacattcagcgacagcgccctgatagccgacgagggcgac
aaggacgctctcaagcatgtagtcgagcccgaccggtttgccgagtcgctcaacaacatg
cgccagattcgattctcggcggcagccaacgccgatgccgaagcttcggccgcaatcgat
ttcggctgtacgccgcagggcatctaccacaagaattttgacctcatcagcgattcactg
ctgaagttcatcggcgacggttacaccgtctacattctcagcgactccgaaaagcagata
gagcgactgcgtgccatatttgaggaccggggcgacgacataaagttcactcccgtcatc
tctacaatccatgaaggatttgtcgaccacgtgaccaaggcatgtatattcaccgaccat
cagatatttgaccgattccacaagtataatctgaagagcgaccgctcccgctcgggaaaa
cttgcactgtcgctcaaggagcttggtcagatagaggtcggcgactatgtggtccatgtc
gaccacggcgtgggccgtttcggcggactcatacgcaccgaggtaaacggtcgcatgcag
gagatgataaaactcgtctacctcaacaacgacattctcctggtgagcatccactcgctg
cacaagcttgccaagtaccgtggcaaggagggcgtggaaccgcgcatcaaccgcctcggt
tcgggcgcgtggggcaagatgaaggagcgcaccaagagcaagctgaaggacattgctcgc
gacctcatcaaactctatgccgcgcgaaaggacgaaaaaggatttgcctattcacccgac
agctatctgcagcaggaacttgaagcatcgttcatctatgaggacacccccgaccagctg
acggccacacaggcggttaaaaacgacatggagtcggcgcggccgatggaccgccttata
tgcggcgatgtgggattcggcaaaacggagattgcaatacgcgccgccttcaaggccgcg
accgacaacaagcagacagccgtccttgtacccactacggtgctcgcctatcagcacttc
aacacattcaagaatcgattgaaagagtttcccgtgcgtgtcgactatctctcgcgagct
cgaagtgcaaaggaggtgaaacagataaaggccgaccttgccgaaggcaaaatcgacatt
ctcataggcactcacaagctcattggcaaggacatcaaattcaaagacctcggactgctg
atcgtcgacgaggagcagaagtttggtgtcgccgtaaaggaaaagctgaagcagatgaag
gtcaatgtcgacacactcaccatgtcggccacccccattccgcgcaccctgcagttctcg
ctgatgggagcccgcgacctgtcggccataaccactccccccgccaaccgttaccccata
ctcacctcggtcaacgctataaacgacgacataatgcttgaagccgtcaacttcgagatg
tcgcgcaacggacaggtgtttatcgtcaaccaccgcatcgaggggctatatgaactggag
gctatgataaaccggctcgtacccgacgcacgcacaatcgtagcccacggacagatgccg
cccgagaaacttgagaaggccataatcgacttcgccaaccacgactacgatgtgctcctc
gcgactactataatcgagtcgggcatcgacatgcccaatgtcaacacaatcgtcatcaac
aacgctcagaacttcggattgagcgagttgcatcagcttcgcggacgagtgggacgcagc
tcccgcaaggctttctgctatcttcttgtgccgcctcacattccgctaaatcccgttgcg
cgtcgacggttgcaggccattgagagtttcagcgaacttggcagcggcatccacatcgcc
atgcaggacctcgacataaggggtgccggaaaccttctcggagccgaacagtcgggattc
attgccgacctcggttatgaaacctaccagcgcatattgaaggaggccgtgcttgaactt
aaaaacgaggagttctccgacactctcacgcccgacgactcgagcgacggacaggaattt
gtggccgactgcgtgatcgaaagcgacatggagctgttgcttccgcccgaatatgtgcct
caggagagcgaacgcataagcctctacaaggagctcgacggcatagagcgcgaactcgac
cttcagcaattcaagcttcatcttgaggaccgattcggcaagattcccaaggaaacagcc
gaactgttgcgcatcccgcgtctgcgttacctggcccgaaggctcggaatcgagaaagta
gtgctgaaacagggatcaatgtacatctactttgtcgacgacaacaacaaggcctactac
cagtcgcctatgtttggccgactgctcaacttcctgcaagctaatccgcgacgctgtcgc
atacgcgaaaaaaacggccgtcgcagttttgcgatagccgatgtgcctactgtcgaggaa
gccgtagccctgctcaacaacgtgttgtcgcttgaaaccatataa
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