Mycobacterium vicinigordonae: H0P51_23475
Help
Entry
H0P51_23475 CDS
T06936
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mgor
Mycobacterium vicinigordonae
Pathway
mgor03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mgor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H0P51_23475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgor03400
]
H0P51_23475
Enzymes [BR:
mgor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H0P51_23475
DNA repair and recombination proteins [BR:
mgor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H0P51_23475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QLL06645
UniProt:
A0A7D6E752
LinkDB
All DBs
Position
complement(5272066..5274333)
Genome browser
AA seq
755 aa
AA seq
DB search
MGSAPEQRVKLTNADKVLYPATGTTKADIFDYYTRIAEFMIPHIAGRPATRKRWPNGVDK
PSFFEKQLASSAPDWLPRASVTHRSGTTTYPIIDSTDGLAWIAQQAALEVHVPQWRFVAQ
WTRGGESLAPGPATRLVFDLDPGEGVAMAQLSEVARAVRDLMAGIGLITYPLTSGSKGLH
LYAPLDEPVSSRGATVLAKRVAQQLEKSMPKLVTSTMTRSLRAGKVFLDWSQNNGSKTTI
APYSLRGREHPTVAAPRSWAELDDTQLSQLRYDEVLARVHRDGDLIAALDPAAPDPDRLT
KYRSMRDASRTPEPVPKSKPEAGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLP
ETTSVNHLAVHTEDHPLEYGGFEGEIPKGEYGAGRVVVWDSGTYEAEKFNDHEVIVNLHG
HRISGRYALIQTNGDQWLAHRMKEQKIFDFDGLAPMLATHGSVTTLTKGQWAFEGKWDGY
RLLVDAEHGVVRLRSRSGRNVTKEFPQLASVADAFADHHLVLDGEVVALDKAGVPSFNEL
QNRVRATRIEFWAFDLLYLDGRSLLRAKYADRRQLLETLASTGDLIVPPLLPGDDGAHAL
EYSRKHGWEGVVAKKRDSTYQPGRRSASWVKDKHWNTQEVVIGGWRVGEGGRSSGIGALL
MGVPGPDGLQFVGRVGTGFTERELSDLKKTFKPLHTDESPFGASLPAREAKGVTFLRPTL
VGEVRYGEWTPDNRLRQSSWRGLRPDKKASEVVRE
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgggttcggcaccggagcagcgggtcaagctgaccaatgccgataaggtgctctatccg
gcgaccgggaccaccaaggccgatatctttgattactacacccggatcgccgagttcatg
atcccgcacattgccgggcggccggcgacgcgcaagcgctggcccaacggagttgacaag
ccgtcgttcttcgaaaagcagctggcgtcgtccgccccggattggctgccgcgggccagc
gtcacccaccggtccgggaccaccacctacccgatcatcgacagcaccgacggactggcc
tggatcgcccaacaggccgcactggaagtgcacgtgccgcaatggcgattcgtcgcgcag
tggacgcgcggcggtgaaagtctcgcgcccggcccggccacccggctggtattcgacctg
gatcccggcgagggcgtggcgatggcccagctgtccgaggtggcccgagccgtgcgggac
ctgatggcgggcatcgggctgatcacctacccgttgaccagcggcagcaagggcctgcat
ctgtatgcgccactggacgagccagtcagcagccggggggccaccgtgctggccaaacgc
gttgcccagcaactggagaagtcgatgccgaaactggtcacttcgacgatgaccaggagc
ctgcgggctggcaaggtgttcctggactggagccagaacaacggctcgaagaccaccatc
gcgccgtactcgcttcgtggccgcgagcacccgaccgtcgccgcgccccgcagttgggcc
gaactcgacgacacccaattgagccagctgcgctacgacgaggtgctggcgcgggtgcac
cgcgacggtgacctgatcgccgcgctcgatcccgcagcacccgaccccgaccggctgaca
aagtaccgcagcatgcgcgacgcgtcgaggacccccgaaccggttccaaagtctaaacct
gaagctggacagggcaatacgttcgtcattcaagaacatcacgcccgtcggctgcactac
gacttccggctggaacgcgacggggtcctggtgtcgtgggcagtgccgaagaacctgccc
gagaccacctcggtcaaccaccttgcggtgcacaccgaggaccacccgctggaatacggt
ggcttcgagggcgaaattcccaagggtgagtacggcgccggcagggtggtcgtctgggac
tcgggcacctacgaggccgagaagttcaacgatcacgaggtgatcgtgaacctgcacggc
catcgaatttcaggacggtatgcgctaattcagaccaacggggaccaatggctggcgcac
cggatgaaggaacagaagatattcgacttcgacgggctggctccgatgcttgccacgcac
gggtcggtgaccactctgacgaagggacagtgggcattcgagggaaagtgggacggctac
cggctgttggtagacgccgagcacggagttgtccggctgcgatcccgcagcggacgtaac
gtcaccaaagagttcccccaacttgcttctgtggctgacgcattcgcggatcaccatttg
gtgctggacggggaagtagtggccttggacaaagccggcgtgcccagcttcaacgaactg
cagaaccgggtccgtgccacacgtatcgaattctgggcattcgacctgctctacctcgat
ggccgatcgctgttgcgggctaagtacgccgaccggcgccagttgctggaaactttggcc
agcaccggcgatctcatcgtcccgccgctactgcccggcgacgacggagcgcacgccctg
gagtactcgcgcaagcatggctgggaaggcgtggtcgccaagaagcgcgactcgacctac
cagccgggccgccgttcggcctcctgggtcaaggacaagcattggaacacccaggaagtc
gtgatcggcggctggcgggtcggcgagggcggacgcagcagcggtatcggagcgttgctg
atgggcgttccgggtcccgacggcctgcagttcgtcggccgggtcggcaccgggttcacc
gaacgcgaactgtcggacctgaagaagaccttcaagccgctgcacaccgacgaatcaccc
ttcggcgcctcacttcccgcccgcgaggcgaagggggtcacgttcctgcgtccgacgctg
gtgggcgaggtgcgctacggcgaatggactccggacaaccggctgcggcagtcgagctgg
cgcgggctgcggcctgacaagaaggcgagtgaggtggtgcgggagtag
DBGET
integrated database retrieval system
