Mucilaginibacter gossypii: DIU38_019845
Help
Entry
DIU38_019845 CDS
T06453
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mgos
Mucilaginibacter gossypii
Brite
KEGG Orthology (KO) [BR:
mgos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mgos03009
]
DIU38_019845 (rlmD)
Enzymes [BR:
mgos01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DIU38_019845 (rlmD)
Ribosome biogenesis [BR:
mgos03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DIU38_019845 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_15
PrmA
Motif
Other DBs
NCBI-ProteinID:
QEM18206
LinkDB
All DBs
Position
4701730..4703136
Genome browser
AA seq
468 aa
AA seq
DB search
MSKANKPKFFENVQIIDIAEEGKGVGKADDFVLFVDKAVPGDVADVQLYRSKKNFGEGKI
TELKQASEYRTQAFCEHFGTCGGCKWQHMTYEAQLKFKQKSVVDALSRLAKINVEGIMPI
VPSPADRYYRNKLEFTFSNKRWLYDGENKEDGTLNMNALGFHIPGRFDKILDVNHCYLQA
EPSNSLRNEIRDFTIQQGYTYYDLRNHSGMLRNLVVRTSSTGEIMVIVVFAYAEQSEIDS
LMSHIDARFPEITSLLYIVNQKKNDTIFDQDVVAFKGPEYIHEEMNGIKFRIGPKSFYQT
NSIQALRLYEITRDFADFKGDELVYDLYTGAGTIANFVAGHVREVVGVEYVPTAIEDAKV
NSAINNITNTKFYAGDMKDVLVADFVAEHGKPDVIITDPPRAGMHPDVVARLMEIEAPKI
VYVSCNAATQARDLLVLKEKYDTVKIQPVDMFPHTQHVENVVLLLLRD
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagctaacaaaccaaagttttttgagaatgtacagatcattgacattgccgaa
gaaggcaaaggggtaggcaaagccgatgactttgtgctttttgtagataaggccgtaccc
ggcgatgtggcagatgtacagctataccgtagtaagaaaaacttcggcgaaggcaagatc
accgaattaaaacaagcttctgaataccgcacgcaagctttttgcgaacacttcggcacc
tgtggtggctgcaaatggcagcacatgacctacgaggcccagcttaaattcaaacaaaaa
tcggttgtcgatgctttaagtcgcctggctaagatcaacgttgaaggcattatgcctatc
gtaccttcgcctgccgacaggtattaccgtaacaagcttgagtttaccttctccaacaaa
cgctggctttatgatggtgaaaacaaggaagacggcacgttaaatatgaatgccctgggt
ttccacattccgggcaggtttgataaaatattagatgtaaaccattgctacctgcaggcc
gagccctccaacagtctgcgtaatgagatccgtgattttaccattcaacagggttatacg
tattacgatctgcgtaatcacagcggtatgctccgcaatctggttgtacgtacctcatca
accggcgagatcatggtgattgtagttttcgcttacgcagaacaaagcgagatcgatagc
ctgatgagccatattgacgcccgtttcccggaaataacttcattgttatatatcgtaaac
cagaaaaagaacgatactatttttgaccaggatgttgtagcctttaaaggccccgaatat
atccacgaggaaatgaatggcatcaagttccgtatagggcctaagtcattttaccagacc
aactccatccaggcacttcgtctgtatgaaataacccgtgatttcgctgattttaaaggc
gatgaactggtttatgacctttacacgggcgccggcaccattgccaactttgttgccggt
cacgtgcgcgaagttgttggtgttgagtatgtacctactgccattgaagatgctaaggta
aattcggccattaataatatcaccaacaccaagttttatgccggtgatatgaaagatgta
ttggtggccgatttcgtagctgagcatggcaaaccggatgtgatcattaccgacccacca
cgtgccggcatgcaccctgatgtagtagcccgcttaatggaaattgaagcccctaaaatt
gtttatgtaagctgcaatgccgccacccaggcccgtgacctgctggtgctaaaagaaaaa
tatgatacggttaaaattcagccggtagatatgtttccgcatacccagcacgtggagaat
gtggtgttacttttgttaagagattag
DBGET
integrated database retrieval system
