Mucilaginibacter gotjawali: MgSA37_00547
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Entry
MgSA37_00547 CDS
T05131
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mgot
Mucilaginibacter gotjawali
Brite
KEGG Orthology (KO) [BR:
mgot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mgot03016
]
MgSA37_00547 (rtcB_1)
Enzymes [BR:
mgot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MgSA37_00547 (rtcB_1)
Transfer RNA biogenesis [BR:
mgot03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MgSA37_00547 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
MgSA37_00547 (rtcB_1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAU52391
UniProt:
A0A120MY17
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All DBs
Position
581343..582860
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AA seq
505 aa
AA seq
DB search
MLKINPKSKISPTGGDLEGADMEKEKITNNELKALGINEVEVLVNFSRVANGLLKHGVMD
RNQILANLEALIDDPMPYALKKGGKFKNLAEDVIALRKEGKFVKQQRSIHTLKAEIADFP
VFGIEHIETGALAQMKTAIQLPIAVAGALMPDAHQGYGLPIGGVLATTANTIIPFAVGVD
IACRMCLSIFDMPAATVDSETDLLKGLLLDHTNFGMGGVTEKYHDTSLFDSKTWGETKVI
RNLKDKAYAQLGTSGTGNHFVEWGELTIAEGALAGIPAGAYLALLSHSGSRGFGGNIANY
YSKIAMTKTKLPPEAKHLAWLDLDKDEGQEYWIAMNLAGEYASANHHEIHHKIAKALNLA
PLMMIENHHNFAWKEQLADGTEVMVHRKGATPAGEGVLGIIPGSMSTPGFVVRGKGDAAS
INSASHGAGRLMSRSAAFKTIDKAAVAANLIDKRITLMGSDIDEAPMVYKDIHTVMAAQT
NLVEVLAKFEPRIVRMADAKERPED
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaaaataaacccaaaatcaaaaatctcccccaccgggggagatttagagggggct
gatatggaaaaagaaaaaataaccaataacgaactcaaagcgctcggcattaacgaagtg
gaggtgcttgtcaactttagccgggtggctaatggcttgctgaaacatggcgtaatggac
cgtaaccagatcctggctaacctggaggcgctgattgacgacccgatgccttatgccctt
aaaaaaggcggcaagtttaaaaacctggccgaagacgtgatcgccctgcgcaaggaaggc
aaatttgtaaaacagcagcgcagtatccacacgttgaaggccgaaattgctgatttcccg
gttttcgggatcgaacatatcgagacgggggcgctggcacagatgaaaacagctatacaa
ttgcccatagctgtcgccggcgccctgatgcccgatgcgcaccagggctacggcctgccc
attggcggcgtgctggccactacggccaataccattataccctttgccgtgggcgtggat
attgcctgccgcatgtgcctcagcattttcgacatgccggccgcaactgttgacagcgaa
acggatctgctgaaaggactgttgcttgaccataccaatttcggtatgggcggggttact
gaaaaataccatgatacctcgctgttcgacagtaaaacatggggcgaaaccaaagtgatc
cgtaatttaaaggacaaggcctacgcgcagctgggtaccagcggcacgggcaaccatttt
gtggaatggggcgaactcaccatcgccgaaggcgccttggcaggcatcccggcgggggcc
tatttggcgctgttgtcgcattccgggtcgcggggctttggggggaatatcgcgaattat
tactcgaagattgccatgaccaaaaccaaattgccgcccgaggccaaacatttggcctgg
ctcgacctggataaggacgaagggcaggaatactggatagcgatgaacctggccggcgaa
tatgccagcgccaaccaccacgagatccatcataaaattgcgaaggctttgaatttggcg
ccgctgatgatgatagaaaaccatcacaactttgcctggaaggaacagcttgccgacggt
accgaagtaatggtacaccgcaaaggcgccaccccggccggcgaaggcgtgctgggtatt
atccccggcagcatgagcacgcccggcttcgtggtgcgcggcaaaggcgacgcggccagc
atcaactccgccagtcatggtgccggccggttgatgagccgcagcgccgcctttaaaacc
atcgacaaagccgccgtggccgccaacctcatcgataaacgcatcaccctgatgggcagc
gacattgacgaggcccccatggtgtataaagatatccacaccgttatggccgcccaaacc
aacctggtagaagtactggcaaagtttgaaccaaggatagtaagaatggcagatgcgaag
gagagaccggaggattag
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