Meleagris gallopavo (turkey): 100539562
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Entry
100539562 CDS
T01523
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
mgp
Meleagris gallopavo (turkey)
Pathway
mgp04382
Cornified envelope formation
mgp04510
Focal adhesion
mgp04512
ECM-receptor interaction
mgp04518
Integrin signaling
mgp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mgp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100539562
04518 Integrin signaling
100539562
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100539562
09142 Cell motility
04820 Cytoskeleton in muscle cells
100539562
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
100539562
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mgp04147
]
100539562
00536 Glycosaminoglycan binding proteins [BR:
mgp00536
]
100539562
Exosome [BR:
mgp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100539562
Glycosaminoglycan binding proteins [BR:
mgp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100539562
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100539562
NCBI-ProteinID:
XP_031410968
Ensembl:
ENSMGAG00000005198
LinkDB
All DBs
Position
11:complement(4853062..4914447)
Genome browser
AA seq
1681 aa
AA seq
DB search
MALTKDSFERIKWLIRTAWWLLIVFSAQEIDGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGELGAQGPIGSLGSTGPAGLPGEKGQRGENGQPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGSEGPRGKHGVDGCNGSRGDPGFPGENGYIGPRGPYGNPGQKGEKGNSVYVSYFGKGLP
GDRGDPGPPGMPGPRGSTGTTGPPGYPGQPGMPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DVGLPGPPGSPLLVGPPGAQLFKGEKGQKGQPGIPGYRGPHGPKGEPGKGEKGEKGIPGF
PGLRGSPGSDGPAGFPGMKGEMGVAGFPGRPGYPGIKGDPGEKGPPGPPGAIGTPLLPVK
GPPGDPGFPGPAGDMGSVGPSGPVGLLGRPGDDGTSLPGLPGISGAPGPQGFQGDPGSPG
TGEAIPGRPGFPGPPGLPGQPGRQGLPGLPSVICTERGIPGEPGVKGQIGLPGRKGEKGE
KGNQGLCSCTAGPPGPRGIQGPPGTQGKKGQMGYPGRHGEKGDSGFSGAVGSPGLPGTPG
PGGQHGEKGEKGDQGRVSIKGIKGERGPTGVPGFPGQKGNDGRDGDLGLPGEKGAEGDSG
VPIPGDKGFPGVPGLPGVKGPMGLPGLGFPGPPGVRGTPGDFGDDGNIGLPGPKGQKGDT
VCITSPYPGNPGPPGFKGVQGPKGLKGLPGLPGRSGFDGPKGQQGRPGAGIPGPEGFRGT
AGDPGEEGERGPTIDGKNGAPGPPGIDGQKGVPGDATYGPPGIPGNRGLPGPPGAQGARG
DPGIPGLQGHPGTPGFPGAKGFRGPEGDIGAPGCPGTPGPPCDTRLPGPAGLRGVIGLPG
SQGLPGYKGQKGDRGLAGPPGIKGLKGSPGSQGPPGPPGSRGLPGLPGNNGQPGFPGQTG
SKGIQGPQGFPGLPGTQGPMGISGVKGEEGNAGPPGPNGECGDMGVKGERGLPGDGGSIN
IRLEKGQKGEPGFPGENGFRGERGEKGNTGFRGAPGFPGNSGAPGLPGDHGDIGLMGFPG
SRGFPGPKGSTGITGFKGLPGDQGDVGLPGMPGNPGLTGPKGPKGKRGDPTLLLGTQGRK
GSPGDLGLPGFCGFPGEKGSPGIQGQPGRPGSKGEPGYPGIPGFPGATGPPGLPGEPGEK
GKHGILGPPGLQGLTGSQGRKGLPGLPGLDGLHGLKGQKGSAGAPGQSETGRPGYSGEPG
PKGERGEPGWPGISIPGTPGERGFPGFPGRRGPVGPSGPRGPSPSSAPPGLPGDQGPPGL
DGIRGQPGNPGPPGETVFVRGDPGDIGIQGAPGIPGHRGLQGARGLPGNQGREGPKGPMG
IHGSRGPPGAVGQPGDQGFQGKPGPKGPTGFIGDPGEPGKTDDSCPAIPGPPGEAGHRGD
DGSIGLPGPIGHPGPQGRKGEEGSCGLPGQDGLPGAPGPPGDQGHVGEQGYAGPQGPPGQ
TGIPGPPGPHIRSSSGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPVFNTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPMTPLSEEEIQPYISRCAVC
EAPAQAVAVHSQDQSIPPCPMNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQXFANEYSFWLTTVMPDLQFASAPLSGTLKEGQEQRKKISRCQVCLKH
D
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaacaaaggattcatttgaacgaattaagtggcttatcagaactgcctggtgg
ctgctgattgttttttcagcacaagaaattgatgggggaggatatgcgtatattgaccca
tgtgggggacaggactgttcagtttgtcggtgctttccagaaaaaggatcaagaggtcaa
cctggtgagctgggagctcaaggaccaattggatccttgggatctacaggaccagctggt
ctgccaggggaaaaaggacagagaggtgagaatgggcagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccaggatttcctggtttagatggtgttcctggatta
ccaggaagtgagggacccaggggcaaacacggtgtggatggctgcaatggctcaagagga
gatccaggatttccaggcgaaaatggatatattggaccaagaggtccttacggaaaccca
gggcaaaaaggagaaaaaggaaattcagtgtatgtttcgtattttggaaaaggactccca
ggagacagaggtgatcctggcccccctggtatgcccggacctagaggatcaacaggtaca
acaggcccacctggatacccaggccaaccaggcatgcctggtattccaggttaccctggt
ttgccaggtgaacagggaaatccaggtattggagtggatggacaaaagggggagccgggt
gacgttggacttcccgggccacctgggtcaccactattagttggacctcctggagctcag
ctgttcaaaggagaaaagggccaaaaaggacaacctgggataccaggatacagagggcca
catggacctaaaggagaacctgggaaaggagaaaagggtgaaaaaggcattcctggattc
cctggattgcggggtagccctggttctgatggacctgcaggttttcctggaatgaaggga
gaaatgggtgttgctggttttcctgggagacctggttatccaggcatcaagggggatcct
ggagaaaaagggcccccaggtcctcctggagctattggaactccactgcttcctgtgaaa
ggcccaccaggagatcctggattcccaggtcctgcaggtgacatggggtcagttggacct
tctggccctgtgggtctactaggaagaccaggagacgatggaacaagtctgcctggtctg
ccaggaataagtggggcaccaggacctcaaggttttcaaggtgaccctggttcgcctgga
acaggtgaagcaattccaggaagacctggatttcctggaccacctggactaccaggacag
ccaggaagacaaggcttacctggactacctagtgtaatttgtactgagagagggattcct
ggagaacctggagtaaaaggtcagataggcctcccgggtagaaaaggtgaaaaaggagaa
aaaggaaatcaaggcctctgctcatgtactgctggtcctcctggtccccgtggtatacaa
ggaccgccaggtactcaagggaagaaaggacaaatgggttaccctggaagacatggagaa
aagggtgattcaggcttttctggtgcagtgggatcaccagggctccctgggacacctggt
cctggaggacaacatggtgaaaaaggagagaagggtgaccaaggaagagtttcaataaaa
ggaataaaaggtgaaagaggtcctactggggttccaggatttccaggccaaaaaggtaat
gatggcagagatggggatttaggattgcctggggaaaaaggagctgagggtgattctgga
gtaccaataccaggtgataaaggatttcctggagttccaggactccccggagtaaaaggg
ccaatgggattgcctggtttggggtttcctggccctccaggagtcagaggtacccctgga
gactttggtgatgatggtaacattgggctgcctggtccaaagggtcagaaaggtgatact
gtgtgtattacatcaccataccctggaaacccaggtcccccaggttttaaaggtgttcaa
gggccaaagggtttaaaaggactccctggtcttcctggacgaagtggctttgatgggcca
aaaggccagcaaggcaggccaggagcaggaatccctggaccagaaggcttccgaggcaca
gctggtgatcctggtgaagaaggtgaaagaggacctaccattgatggtaaaaatggtgct
ccaggtccacctggcatagatggccagaagggtgttccaggtgatgctacatatggccct
ccaggaatcccaggcaacaggggactgccaggaccacctggtgcacaaggagcaaggggt
gatccaggcattcctgggcttcaagggcatcctgggaccccaggatttccaggtgctaaa
ggttttaggggcccagaaggtgatataggagcaccaggctgtccaggcacccctggtcca
ccatgtgacacaagattaccagggccagctggtctcagaggtgtcataggtctgccaggt
tctcaaggcttaccaggctataaaggtcagaagggagacaggggtctagctgggccacct
ggaatcaaaggtctcaagggctctcctggctcacagggccccccaggtcctccagggtcc
cgaggacttccaggacttccaggcaataatggacagcctggcttcccaggtcaaacagga
agcaaagggattcaaggaccccaaggattccctggactcccaggaacacaaggcccaatg
ggaatctctggtgtaaaaggggaagaaggaaacgcgggtccacctgggcctaatggagaa
tgtggggatatgggagtgaaaggtgaaagagggcttccaggagatggtggcagcattaat
attcggcttgagaaaggacaaaagggggaaccagggtttcctggtgaaaatggatttaga
ggtgaaagaggtgaaaaaggaaatacaggtttcagaggtgccccaggatttccagggaac
agcggtgccccaggacttccaggtgaccatggagacattggactgatgggatttccagga
tcacgtggtttcccaggaccaaagggctctacaggaattacaggtttcaaaggactaccg
ggtgaccagggtgatgttggcttaccaggaatgcctggaaacccaggactgacaggcccc
aaaggacctaaaggaaagagaggtgacccaactcttctgcttggtacacaaggtcgaaaa
gggtctcctggagatctaggattaccaggattctgtggattcccaggtgagaaaggatca
ccaggtatccaaggacaacctggaagaccaggatccaagggcgagcctggatacccagga
atacctggatttccaggagctacaggtcctccaggattgccaggagaacctggagaaaaa
gggaaacatggaattttgggacctccagggcttcaaggattaactggatcacaaggtaga
aaaggtcttcctggactgcctggactggatggcttgcacggactaaaaggtcaaaaaggt
tctgcaggagctccaggtcaaagtgaaacagggcgcccaggatactcaggagaacctgga
ccaaaaggagagagaggtgaacctggatggcctggtatttccattccaggcacccctgga
gaaaggggattcccaggattcccaggtagaagaggacctgttggacccagtggacctagg
ggaccatctcccagtagtgctcctcctggtcttccaggtgatcaaggaccacctggttta
gatggcatcagaggtcagcctgggaatcctggtcctcctggagagactgtctttgtgcga
ggagatccaggtgacattggtattcaaggggcaccaggcattcctgggcaccgagggcta
caaggagccagaggtcttccaggaaatcaaggaagagaaggtccaaagggtccaatggga
atccatggctcgcggggtccacctggtgctgtaggacaaccaggagaccaaggttttcaa
ggaaaacctggtcctaaaggtcccacagggttcataggtgatcctggtgaaccaggaaaa
acagatgactcatgtcctgcaatcccagggcctcctggggaagcaggacatagaggagat
gatggttcaataggattaccagggccaataggtcaccctggaccccaaggaaggaaaggt
gaagaagggtcatgtggcctgcctggtcaagatggcttaccgggagcacctggaccacca
ggtgaccaagggcatgtgggagagcaaggatatgctggaccacaaggtccacctggtcag
actggtatcccaggaccaccagggccccatattagatcttcaagtggattcttgctcgtc
cttcatagtcagtcagacagagaaccactctgtccacaggggatgccaaaattatggact
ggctatagtctgctgtacctggaaggacaagagaaagctcataatcaagatcttggtctg
gcaggatcttgtcttcctgtgtttaataccatgccctttgcttactgcaacatcaaccaa
gtttgttactatgccagccgaaacgataagtcctactggttgtcaagtgctgctccctta
ccaatgacaccactctctgaagaagaaatacaaccatatataagcagatgtgctgtatgt
gaggctccagctcaagcagtagcagttcacagccaagatcagtcaattcctccctgccca
atgaactggagaagtctttggataggatattcttttctgatgcacactggatctggtgat
cagggaggtgggcagtcccttatgtcaccaggaagctgcttagaagacttcagatcagcg
ccattcattgaatgccagggtcagcggggaacttgtcagntttttgctaatgaatacagc
ttctggctaacaacagtgatgcctgacttgcagtttgcatcagctcccttgtcaggaact
cttaaagaaggacaagaacagaggaaaaaaatcagtagatgtcaggtatgcctgaagcat
gattaa
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integrated database retrieval system
