Meleagris gallopavo (turkey): 100539950
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Entry
100539950 CDS
T01523
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mgp
Meleagris gallopavo (turkey)
Brite
KEGG Orthology (KO) [BR:
mgp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mgp03016
]
100539950 (RTCB)
Enzymes [BR:
mgp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
100539950 (RTCB)
Transfer RNA biogenesis [BR:
mgp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
100539950 (RTCB)
Prokaryotic type
tRNA splicing ligases
100539950 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
100539950
NCBI-ProteinID:
XP_010710887
Ensembl:
ENSMGAG00000012805
LinkDB
All DBs
Position
1:52249725..52256539
Genome browser
AA seq
331 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
VEGQDYLKGMAAAGNYAWVNRSSMTFLTRQV
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgcccaacatgcacgtggagggagttttctacgtgaacgac
ccgctagagaagctgatgttcgaggagctgcgcaacgcctgccgcggcggaggtgcgggt
ggctttttgcctgctatgaaacagattgggaatgtggctgcattgcctggaatcgttcat
agatccataggcctgccagatgtccactctggctatggctttgccattggcaacatggca
gcctttgatatgaatgatcctgaagcagtggtgtcaccaggtggtgtcggatttgacatc
aactgcggtgtccgcttactgcgtacaaatttggatgaaagtgatgtgcagcctgtgaag
gagcagcttgcccaggctatgtttgaccacattcctgtcggtgttggttcaaagggtgtc
atccccatgaatgccaaggatttggaagaggctctagagatgggtgtagactggtctctc
cgggaaggctatgcctgggcagaggacaaggaacactgtgaggagtatggaagaatgctg
caggctgatcccaacaaagtctcttcgagagcaaagaagaggggcctgcctcagctgggg
accctgggagcaggaaatcactatgctgagatccaggttgtggatgacatttacaatgaa
tatgctgccaggaagatgggcatcgaccacaaaggacaggtttgcgtcatgatccatagc
ggcagcagaggtttgggccaccaagttgccacagatgcattggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaacgatcgccagctagcgtgtgccaggattgcctct
gtggaggggcaggattacttgaagggaatggcagctgctggaaactatgcgtgggtcaac
cgctcttctatgactttcttaacaagacaggtatga
DBGET
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