Meleagris gallopavo (turkey): 100540311
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Entry
100540311 CDS
T01523
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
mgp
Meleagris gallopavo (turkey)
Pathway
mgp04510
Focal adhesion
mgp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
mgp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100540311
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100540311
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mgp00536
]
100540311
Glycosaminoglycan binding proteins [BR:
mgp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100540311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COLFI
Collagen
Motif
Other DBs
NCBI-GeneID:
100540311
NCBI-ProteinID:
XP_010725117
Ensembl:
ENSMGAG00000004892
LinkDB
All DBs
Position
Unknown
AA seq
886 aa
AA seq
DB search
MGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPVGERGEQGAPGP
SGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGL
PGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGK
DGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGA
DGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGA
AGRVGPPGPNGNPGPPGPPGSAGKDGPKGVRGDAGPPGRAGDPGSQGPAGPPGEKGEPGE
DGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGP
VGPPGLTGPAGEPGREGNPGADGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGP
TGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGL
PGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGP
PGNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAGGLRQHDVEVDATLKS
LNNQIESIRSPEGSKKNPARTCRDIKLCHPDWKSGDYWIDPNQGCTLDAIKVFCNMETGE
TCVYPTPSSIPKKNWWTSKSKDKKHVWFAETINGGFHFSYGDENLSPNTASIQMTFLRLL
STEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKH
TGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGAEQEFGVDIGPVCFL
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgggtttccccggtcccaaaggtgctaatggtgaacctggaaaagctggtgagaaagga
ctgcctggtgccccagggctgcggggtcttcctggcaaggatggggagacaggagctgct
ggaccccccggacccgctggtcctgtgggtgagagaggagagcaaggagcccccggtcct
tccggattccagggactgcctggaccaccaggtccccctggagagagcggcaaacccgga
gaccagggtgttcctggagaagctggtgcccccggtcttgttggtcccagaggtgaacgt
ggattccccggtgaacgtggctctcctggtgcccaagggctgcagggtccccgtgggctg
cccggaacacctggcactgacggacctaagggtgcaactggtccggctggccccaacggt
gcccagggtcccccagggctgcagggaatgcctggtgagagaggagcagctggcattgct
ggccccaagggtgaccggggagatgttggtgaaaaaggacctgagggagctccgggcaag
gacggcgcacgtggtctgacgggtcccattggtccccctggccccgctggccccaacggc
gagaagggtgaatccggccctcctggtccatctggtgctgccggtgcccgtggagcccct
ggcgagcgtggcgagcccggtgcccctggtcctgctggatttgctggtcccccgggtgcc
gacggacaacctggtgccaaaggcgagcagggagagcctgggcagaagggtgacgccggc
gctcctggtccccaaggtccttccggcgctcctggccctcagggtccaactggtgtcact
ggtcccaaaggagctcgcggggctcagggtccccctggagccacgggattccccggagcc
gccggccgcgtgggaccacccggccctaatggtaacccaggcccccctggaccccctggc
tctgctggcaaagatggccccaagggtgttcgtggcgatgccggcccccctggccgtgct
ggagaccccggctcccaaggccccgccggcccccccggcgagaagggcgaacccggcgag
gacggccccgcgggtcccgacggcccccccggacctcaaggcttggcaggacagcgtggt
atcgtgggtctcccaggacagcgtggtgagagaggcttccccggactgccagggccatcg
ggagaacctggaaagcaaggagcacctggctctgcaggcgaccgaggtccccccggcccc
gtgggcccccctgggctgacaggtcctgctggagaacccgggcgtgagggcaaccccggt
gctgacggacccccgggcagggatggtgcagctggcgtgaagggtgatcgtggtgagacc
ggccctgtgggtgcccctggtgctcccggagcccccggtgctcctggtcccgttggtccc
actggaaaacaaggagacagaggcgagacgggtgcacaagggcccatgggtccctctggt
cccgctggagctcgaggaatgccgggtccccaagggcctcgtggtgacaaaggtgagaca
ggagaggctggagagagagggctgaagggccaccgcggcttcaccggtctgcagggtctg
cctggaccacccggcccctctggagaccaaggtgctgccggtcccgctggtccctccggt
cccagaggtccccctggtcccgtcggtccctctggcaaagacggctccaacggcatgcct
ggccccatcggtcctcccggtccccgcggacggagcggtgaacctggccctgcgggtcct
cctggaaaccccggtcctcccggtcctcccggtcccccgggcaccggcatcgacatgtca
gcttttgccggactgggtcagacagagaagggccccgaccccatccgctacatgagggca
gacgaggcggccggagggctgcgacagcacgacgtggaggtggacgccacgctcaaatcc
ctcaacaatcagatcgagagcatccgcagccccgagggatccaagaagaacccagccagg
acctgccgtgacatcaagctctgccatcccgactggaagagcggagattactggattgac
ccgaaccagggctgcaccttggacgccatcaaagttttctgcaacatggagacgggcgag
acctgtgtctacccgacccccagcagcatccccaagaagaactggtggaccagcaagtca
aaggacaagaagcacgtttggtttgcagagaccatcaacggcggtttccactttagctac
ggcgatgagaacctgtcccccaacaccgccagcatccagatgaccttcctgcgcctcctg
tccaccgagggctcccagaacgtcacctaccactgcaagaacagcatcgcctacatggac
gaggagacgggcaacctgaagaaagccatcctcatccagggatccaacgacgtggagatc
agagctgagggcaacagcaggttcacctacagcgtcttggaggacggctgcacgaaacac
actggcaaatggggcaagactgtcatcgagtaccggtcgcagaagacctcgcgcctgccc
attgtagatattgcacctatggacattggcggagccgagcaggagtttggcgtggatatt
ggcccagtctgcttcttgtaa
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