KEGG   Meleagris gallopavo (turkey): 100542078
Entry
100542078         CDS       T01523                                 
Symbol
THOC2
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 2
  KO
K12879  THO complex subunit 2
Organism
mgp  Meleagris gallopavo (turkey)
Pathway
mgp03013  Nucleocytoplasmic transport
mgp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mgp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100542078 (THOC2)
  09122 Translation
   03013 Nucleocytoplasmic transport
    100542078 (THOC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mgp03019]
    100542078 (THOC2)
   03041 Spliceosome [BR:mgp03041]
    100542078 (THOC2)
Messenger RNA biogenesis [BR:mgp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     100542078 (THOC2)
Spliceosome [BR:mgp03041]
 Complex C
  Other components
   EJC/TREX
    100542078 (THOC2)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100542078 (THOC2)
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 100542078
NCBI-ProteinID: XP_010713706
Ensembl: ENSMGAG00000007345
LinkDB
Position
9:15516578..15568137
AA seq 1592 aa
MATVLPAEWIKNWEKGGRNEFLQLCRALSEDKSHDSLSFRDIQQALYELSSHVVRGNLKH
EQASGVLADIIEFREDMPSILADAFCILDIETSCLEEKXKRDCFTQLVLSCLYLVSDTVL
KERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDL
SGNITSDLILENIKSLIGCFNLDPNRVLDIILEVYECRPEYDDFFVPLIESYMYMCEPQT
LCHILGFKFKFYQDPSGETPSSLYRVAAVLLQHNLIDLEDLYVHLLPGDNAIIEEHKREI
VEAKQIVRKLTMVVLSSEKTEEKEKEKEKEEEKTEKPPDNQKLGLLEALLKIGDWQHAQS
IMDQMPPFYATSHKPIAIALCQLVHVTIEPLYRRVGVPKGAKGSPISPLPNKRAPKQADS
FEDLRKEVFNMLCYLGPHLSHDPILFAKVVRLGKAFMKEFQSDGSKQEDKEKMEILFSCV
LSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQYRYRLYGQWKNETYNSHPLLVKVKA
QTIDRAKYIMKRLTKENVKPSGRQIGKLSHANPTILFDYILSQIQKYDNLITPVVDSLKY
LTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIELAGLLQY
VANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIRNTK
KSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQFGGF
LASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHQISSKYDELKKAEKGNKQQ
HKVHKYITACELVMAPVHEAVISLHPPKVWDDISPQFYATFWSLTMYDLAVPHSSYDREV
NKLKVQMKAIDDNQEMPPNKRXKEKERCTALQDKLLEEEKKQLEHVQRVLQRLKLEKDNW
LLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCAHFVELVHQQKTPNFSTLLCYDRVFSD
IIYTVASCTENEASRYGRFLCCMLETVTRWHSDRVIYEKECGNYPGFLTILRATGFDGGN
KADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQA
LERRVHKICQEEKEKRPDLYALAMGYSGQLKSRKPFMIPENEFHHKDPPARNAVAATVQN
GPGGAGMPTSLTINTAKLEENAAEETDKLKEKSQGTVKVINKTVNATPKVTTSNGNSASN
SKIIKEKDDKEKSGKEKDKEKKEKIPATTPETKALGKDGKDKPKEERANKDEKPREIKEK
TPKSDKEKEKAKKEEKASKEEKSKTIVTTIESKSVAEKEREKEPSREKDVAKDMKSKENT
KGGEKIPVAGSLKSPVPRSETSECEREQKRRKVDIHSSPSHSSTVKDNLNELKDSSTKHY
INHTTPTLSKSKEREVDKKDLDKSRERSREREKKEEKDRKDRKRDHSNSDREVPQDSTKR
RKEENGTTGSSKHSSESPSDSPRSNEKEREKSKSKSSGKEKGDSIKAEKMEKSSSGSKKE
SRHDKEKEKKEKRDSTGGKEEKKHHKSSDKHR
NT seq 4779 nt   +upstreamnt  +downstreamnt
atggcgaccgtgctccccgccgagtggataaagaactgggagaaagggggcaggaacgag
tttttgcaactgtgtcgcgctctcagtgaagacaaaagccatgacagcctcagtttcaga
gatatccagcaggctttgtatgagctttcatctcatgttgttagaggaaacttgaagcat
gaacaagcttctggggttcttgctgatattatagaatttcgtgaggacatgccttccatc
ttagctgatgcattctgcatattagatattgaaacaagttgcttagaagaaaaanctaaa
agggattgttttactcagctggtgttatcatgcttgtatcttgtatccgatactgtccta
aaggagcgtttagatccagaaacactggaatcattaggacttatcaagcagtctcaacag
ttcaaccagaagtctgttaaaataaagacaaaactattttacaagcaacagaaattcaat
ttattacgagaggagaacgaaggttatgcaaagctgattgcagaactggggcaagaccta
tctggaaatatcactagtgatttaatccttgaaaatatcaaatctttaataggatgtttt
aaccttgatcctaacagagttttggatattatcctagaagtctatgagtgcaggcctgag
tatgatgatttctttgtaccactgatagagtcttacatgtacatgtgtgaacctcaaact
ctatgccatatccttggattcaaattcaagttttatcaggatccaagtggtgagacacct
tcctccctgtacagagttgctgctgtcctgttgcaacataatctcatagatttggaagat
ctttatgttcatcttcttccaggggataatgccatcattgaagagcacaagcgagagata
gtggaagctaagcaaattgtgagaaaactcaccatggttgtcttatcctctgagaagact
gaggaaaaggagaaggagaaagaaaaagaggaggagaaaaccgagaagcctccagataat
cagaagcttggtttattggaagctttattaaaaattggtgattggcagcacgcacaaagt
attatggatcagatgcctccattttatgctacttcacataagcccattgcgattgccctt
tgccagcttgtacacgtgacaatcgaacctttgtaccgcagggttggtgtaccaaaaggg
gctaaagggtcaccaatttctcctctgccaaacaagagagcaccgaaacaagcagacagc
tttgaagacttgagaaaggaagtgttcaacatgctatgctaccttggtcctcatctctcc
cacgatcccattttatttgcgaaagtggtgcgccttggaaaagcatttatgaaagagttt
cagtctgatggaagcaagcaagaagataaggagaaaatggagatactgttcagctgcgtg
ttgagcattaccgatcaggttctgcttccttctctttctctgatggactgcaatgcgtgc
atgtctgaagagttatggggaatgttcaaaacatttccataccagtaccggtaccgtctt
tatggacagtggaagaatgaaacatacaatagccatcctctcctagtgaaagttaaagct
caaaccatagaccgagccaagtatatcatgaagcgtctgactaaggaaaatgtgaaacca
tctggaagacagattgggaaactcagccatgccaatccaaccattttatttgattatatt
ttatcacaaatacaaaaatatgataacttaataaccccagttgttgattcactgaaatac
ctcacttcactgaattacgacgtcttggcatattgtatcattgaagctctggcaaacccc
gagaaggagagaatgaagcatgacgacactactatctcgagctggctgcagagtctggct
agcttttgtggtgctgttttcagaaaatacccaattgaacttgctggtctacttcaatac
gtagccaaccagttgaaagctgggaaaagctttgatttgcttattttaaaagaggtagta
caaaaaatggcagggatagaaattacagaagaaatgacaatggaacagttggaagccatg
actggtggagaacaactaaaagctgagggtggatactttggccaaattaggaatacgaag
aagtcttctcagaggttgaaggatgcattattggaccacgatcttgccctcccactatgc
ctgcttatggctcaacagagaaatggtgtgatctttcaagaaggaggggaaaaacatctg
aagctggtgggaaaactgtatgatcaatgccatgacaccctggtacagtttggtgggttt
ttagcatccaacctgagcacagaggattacattaagcgagtgccttcaattgacgttctt
tgtaatgagtttcacacacctcatgatgctgcgtttttcctctcgaggcccatgtatgca
caccaaatttcatcaaagtatgatgaacttaaaaaagctgaaaagggaaataaacagcaa
cacaaagttcataaatacattacagcatgtgaactggtgatggctccagttcatgaagct
gtgatctctctgcaccctcccaaggtttgggatgacatcagtcctcagttttatgccaca
ttctggtctctgactatgtatgaccttgctgtcccacacagcagctatgacagagaagtc
aataaacttaaagtccagatgaaagccatagatgacaatcaggaaatgcctccaaataaa
agannaaaagaaaaagaacgttgcactgctcttcaggacaagctccttgaagaggagaag
aaacaattagagcacgttcaaagagttttacagagactgaaattagagaaggataactgg
cttctggcaaagtctaccaaaaatgagactatcacaaagtttttgcagttatgtatattt
cctcgctgcattttttcggcaatagatgcggtttattgtgctcactttgtagaactggtt
catcagcagaaaacacccaacttctccacgcttctctgttatgatagagttttctctgat
attatatatacagtagcaagttgtaccgaaaatgaagctagtagatacggcaggtttttg
tgctgcatgctggagactgtgactagatggcacagtgacagagtcatatatgagaaggaa
tgtggcaactatccaggcttcctaactatattacgagcaactggatttgatggtggaaat
aaagctgatcaattggattatgagaatttcagacatgtagtacacaaatggcactataaa
ttaactaaggcttctgtacactgccttgaaactggtgaatatacacacatcagaaatatc
ctgattgtgctgaccaaaatccttccatggtatccaaaagtgttgaacctgggccaagcc
ttggaaagaagagtacataagatatgtcaggaagagaaagagaagagacctgatctatat
gcattggctatgggctattctgggcagttgaaaagtaggaagccttttatgatacctgaa
aatgaattccaccacaaagacccacctgccaggaatgctgtagctgcaacagtacaaaat
gggccaggtggtgctgggatgcctacatctctcacaataaatacagcgaaactggaggaa
aacgctgctgaagagactgataaactaaaggagaagtctcagggtactgtgaaagtcatt
aataaaactgtcaatgctacaccgaaggtgacaacaagcaatggaaacagtgcttctaac
agcaaaattattaaagagaaagatgataaagaaaaaagcgggaaggaaaaagataaagaa
aagaaagaaaagattccagctaccactccagagacgaaggcacttgggaaggatgggaaa
gataaaccaaaggaagaacgggcaaataaagatgagaaaccaagagagattaaggagaaa
acaccgaaatctgacaaagagaaggagaaggccaagaaagaagaaaaagcttcaaaggaa
gaaaaatccaagacaattgttaccaccattgagtcaaagtcagttgcagaaaaggagaga
gaaaaggagccatccagagaaaaagatgtagcaaaggatatgaaatccaaggaaaatact
aaaggaggagaaaagattccagtagctgggtccttgaagtctcctgttccccgatcagaa
acatcagaatgtgagagggaacaaaaacgccgcaaagttgatatccattcttctccatca
cattcctcaacagtaaaggacaacctcaacgaactcaaggactcttcaacaaagcactac
attaaccacactactccaacactgtccaagagtaaagagagagaagtggacaagaaagac
ttggacaagtcaagggaaagatccagagagagagagaagaaagaggaaaaggacaggaaa
gatcgaaaaagggatcattccaacagtgaccgagaggtgccacaggattcaactaaacga
cgcaaggaagaaaatgggacaacaggttcttcaaaacatagtagcgaaagtccttctgat
tctcctcgttcaaatgaaaaagagagggagaagagcaaatcaaaatcttcaggaaaagaa
aaaggtgattcaattaaagcagaaaagatggagaagagctcctctggtagcaaaaaggaa
tcaagacatgacaaagaaaaagaaaagaaagaaaaacgagacagcactggagggaaagaa
gaaaagaaacatcataaatcttcagacaagcacagataa

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