Meleagris gallopavo (turkey): 100543184
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Entry
100543184 CDS
T01523
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
mgp
Meleagris gallopavo (turkey)
Pathway
mgp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mgp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100543184 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mgp03041
]
100543184 (DDX42)
Enzymes [BR:
mgp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100543184 (DDX42)
Spliceosome [BR:
mgp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100543184 (DDX42)
Complex B
100543184 (DDX42)
Complex C
U2 SnRNP specific factors
100543184 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
100543184
NCBI-ProteinID:
XP_003213086
Ensembl:
ENSMGAG00000001822
UniProt:
G1MSP1
LinkDB
All DBs
Position
29:788443..803372
Genome browser
AA seq
944 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDNSNVDLPYIPAENSPTRQQFNSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNAKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSESSDRGNNNSVMSNYEAYKPSSGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPDSPIAATAAAKGVPGFTSTGTLSSVPT
FPSVGMQGYNNTNSANASAANREGIGSAGGAPRGGSGGGGGGGIVRERYSDNRNSRHNEV
PRRGEGGGRYNDLQHHGEGGGRYSDAYRHGEGRHGDSHRHAESRHFADVGGANRNNVDGR
NISEGRSNESRNGENRKDAGSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtacgaagagaggctttggttttggtggatttgcc
ataacccctggaaagaaagaggagccgaagctttctcagcagtctcacagtgcttttgga
acagccggttcttctgctgcgtttgcgaaatcaggacctccacagctgccttctttctac
aaaattgggtcaaagcgagcgaatttcgatgaagaaaatgcgtactttgaggatgaagag
gaggataacagcaatgttgacttgccatacattcctgcagagaattcccccactcgccag
cagtttaattccaaatcggccgactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagaggctggaggataaagacaaggaa
aaaaagaatgctaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccccactgctggtgtggtgcaagaagaggaagaggataat
ctggagtatgacagtgatgggaatccaattgcaccatccaaaaaaatcattgaccctctt
ccacctattgaccattcagagattgaatatcccccatttgagaaaaacttctacgatgag
catgaagagatcaccagtctgaccccacagcaggtggtggagttacggcacaagctgaac
ctgcgggtctccggtgctgctcctccaagaccaggcagcagttttgctcattttggattt
gatgagcagcttatgcatcaaattaggaaatctgagtatacccagcccacgcctatacaa
tgtcagggtgttccagttgccatgagtggcagagatatgattgggatagctaagactgga
agtggaaaaacagcagccttcatctggccgatgctgattcacatcatggatcaaaaggag
cttgaaccaggagatggccccattgcagtgattgtatgcccgaccagagagctttgccaa
cagatccattctgaatgtaagcgctttggaaaggcgtacaacctgcgctcagtagcagtc
tatggaggagggagcatgtgggagcaagccaaagccctccaggagggggcagagattgtg
gtctgcacaccaggtcgtttgattgatcatgtgaaaaagaaagctacaaaccttcagaga
gtcacttaccttgtgtttgatgaagcagacagaatgtttgatatggggtttgaataccag
gtcagatcaattgcaagccacgtgcgtccggatagacagacccttttgttcagtgccacc
ttccgtaagaagattgagaaattggcccgagatattctgatcgacccaattcgagtggtg
cagggagacattggagaggcaaatgaagacgttactcaaatagtggagattttcccctct
ggtcccagcaagtggaactggctgacacggcgccttgtggagttcacatcttctgggagt
gttctcctgtttgtcactaagaaggcaaacgctgaagagctggctaataacctcaagcag
gaggatcataacctggggctccttcatggtgacatggaccagagtgagaggaataaagtc
atttcagaatttaagaaaaaggggatcccgatactggtagctactgatgtagcagctcgt
gggttggatattccttccattaagactgtgattaattacgatgtggctcgggacattgac
acacacacccacaggatcgggcgtaccggcagggcgggcgagaagggagttgcctacacc
ctgctgactcccaaggacagcaacttcgctggggatcttgtcagaaatctggaaggtgct
aatcaacatgtttccaaagagctgttggatctagcaatgcagaacccgtggttccggaaa
tcccgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggtggcttaggatat
cgtgagcgtcctggcctgggatcagagagttctgaccgtggcaacaacaacagtgtgatg
agtaactatgaagcatacaagccatcatctggggcaatgggagacagacttacagcaatg
aaagcagcttttcagtctcagtacaagagccactttgttgctgcaagcttaaataaccaa
aagactggaagctctgctgctggtgcgagtggctggaccagcgctgggagcttgaactca
gtacctacaagttctgcacaacaaaatgctgcaaaccctgacagccccattgcagccacc
gcagcagcaaagggcgtcccgggtttcaccagcaccgggactctgagcagcgttcccacc
tttcccagcgtcggaatgcagggctacaacaacaccaacagcgcaaacgccagcgccgct
aatcgggaaggcatcggcagcgccggcggcgctcctcgcggtggcagcggtggaggcgga
ggcggcggcatcgttagggaacgctacagcgacaacaggaacagtcggcacaacgaggtc
ccgcgccgcggggagggcggcggtcgctacaacgacttgcagcatcacggagaggggggc
ggtcgctacagcgatgcctatcggcacggggagggccgacacggggacagccatcgccac
gctgagagccggcacttcgccgacgtgggaggtgccaatcgcaataacgtcgacggcagg
aatatcagcgaagggaggagcaacgagagcaggaatggtgagaacaggaaggatgccggc
agccgagacaacaagacagatggttttgctgtcccagagcccccaaaacgtaagaagagc
cgatgggacagttaa
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integrated database retrieval system
