Meleagris gallopavo (turkey): 100550112
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Entry
100550112 CDS
T01523
Gene name
LIG1
Definition
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mgp
Meleagris gallopavo (turkey)
Pathway
mgp03030
DNA replication
mgp03410
Base excision repair
mgp03420
Nucleotide excision repair
mgp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mgp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100550112 (LIG1)
03410 Base excision repair
100550112 (LIG1)
03420 Nucleotide excision repair
100550112 (LIG1)
03430 Mismatch repair
100550112 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mgp03032
]
100550112 (LIG1)
03400 DNA repair and recombination proteins [BR:
mgp03400
]
100550112 (LIG1)
Enzymes [BR:
mgp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100550112 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
100550112 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
100550112 (LIG1)
DNA replication proteins [BR:
mgp03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
100550112 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
100550112 (LIG1)
DNA repair and recombination proteins [BR:
mgp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
100550112 (LIG1)
NER (nucleotide excision repair)
Other NER factors
100550112 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
100550112 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DDR
Motif
Other DBs
NCBI-GeneID:
100550112
NCBI-ProteinID:
XP_019468290
Ensembl:
ENSMGAG00000010919
LinkDB
All DBs
Position
1
AA seq
777 aa
AA seq
DB search
MQRRITSFFAPPRAADGVVPARVQKLERSPPEETLQEHRDPDGSADPTSPGSSSAPVPPA
SPRAPCCTPSQQQPGDTDGDSDGDRDSAPPASKRCRQSPGDQDKGPPRPHKAPASNSCIP
VEPSQYDPSRSGYHPVQDACWGHGRSVPYLAVARTFERIEEASSRLKIIEILTNFLRSVV
ALSPSELLPCLLLCLNRPGAASEGLELGIGETLLTRALAQATGRQLAQIRSEAQDKGDLG
LVAESSRCTQRTVVPPAPLSASGVLGKLREMAAMSGNASASKKIDIVKGLFVACRHSEAR
YLVRSLSGKLRIGLAEQSVLTALAHAVALTPPGQERPLAVVDAGQSMAPDARRTWLEEQS
RILKQTFCELPDYTAIVPVLLEHGLEQLPKHCGITPGVPLKPMLAQPARCVSELLKRFEE
AAFTCEYKYDGERTQIHVLDSGAVFIYSRNQENTTAKYPDLVERIPKMLKPGVRSCILDA
EAVAWDKVTKQLQPFQVLMTRKRKDVDAAAIKVQVCVYAFDLLYLNGEPLVREPLATRRR
LLRESFEEVEGEFLFATSMDTRSADEVSDFLDKAIKASCEGLMVKTLEVEATYEIAKRSH
KWLKLKKDYLDGLGDTLDLVVIGAYLGKGKRAGIYGGFLLACYDEESEEYQSICKIGTGF
TEESLEKHYNFLKEHVLTQPRPYYRWDNAVAPDRWLAAVQVWEVKCGDLSISPVYRAAVG
LVDEDKGISLRFPRFLRVRGDKKPEEATSSTQVAELYKKQQQIQNQQQAEKGDEEFY
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggcggatcacgtcttttttcgccccccccagggccgcagatggcgtcgtccca
gcgcgtgtgcagaagttggaacggagcccccccgaagagaccctccaggaacatcgggac
cccgatgggagcgcggatcccacatcccctggcagcagctctgcccctgtaccccccgcg
tcccctcgtgccccctgctgtaccccctcccaacagcagccaggggacacggatggagac
agtgatggggacagggacagtgccccccccgcatccaagcgctgccgtcagtcgcccggc
gaccaggacaagggacctccccgtccccacaaagctccagcctccaacagctgtatacca
gtggagccatcccagtatgaccccagcaggagtgggtaccacccagtgcaggatgcgtgc
tgggggcatgggcgcagtgtcccctacctggcggtggctcgcacctttgagcgcatcgag
gaagcctcatcccgactgaagatcattgagatcctcaccaacttcctgcgctccgtggtg
gccctgtccccctccgagctgctcccctgtcttcttctgtgcctcaaccgtcccggagcc
gcctctgaggggctggagctgggcatcggcgagaccctgctcacccgtgccctcgcccag
gccactggccgccagctggctcagatccgcagtgaagcgcaggacaaaggggatttgggg
ctggtggccgaaagcagccgctgcacccaacgcacggtggtgccaccggccccgctgagt
gccagcggtgtcctcggcaagctgcgggagatggccgccatgtcaggcaacgcgtctgct
agcaagaagattgacatcgtcaaggggctgtttgttgcctgccggcactcggaggcacga
tacctcgtccggtcgctcagtgggaagctgcgcattgggctggccgagcagtcggtgctc
accgcgctggcacacgccgttgctctcacgccgccagggcaagagcggccgctggctgtg
gtggatgctgggcagagcatggcacctgatgcacgcagaacttggttggaggagcagagc
cgcatcctcaagcagactttctgtgagctgccagactacactgccattgtcccagtgctg
ctggagcacggcctggagcagctccccaagcactgcggcatcactccaggtgttcccttg
aagcccatgctggcccaacctgctcgctgcgtcagtgagctgctgaagcgctttgaggag
gctgcattcacctgcgagtacaaatatgatggggaacgaacccagatccatgtcctggat
agcggggccgtcttcatctacagccgcaaccaggagaacacaacagccaaataccctgac
ctcgtcgagcgcatccccaagatgctgaagcccggcgtgcgctcgtgcatcctggatgca
gaagcggtggcctgggacaaggtcaccaagcagctgcagcccttccaggtgctgatgacg
aggaagaggaaggatgtggatgccgctgccattaaggtgcaagtgtgtgtctatgccttt
gatctgctatacctcaatggggagccactggtgcgggagcccttggccacgcgacgtcgg
ttgttgcgagagtcattcgaggaagtggagggcgaattcctctttgccacctcgatggac
acccgcagtgctgatgaggtctctgatttcctggacaaagccatcaaggcctcttgtgag
ggcctcatggtgaagacactggaggtggaggccacgtacgagattgccaagcggtcccac
aagtggctgaagctgaagaaggactacctcgatggccttggggacacgctggacctcgtt
gtcataggtgcctacctgggcaagggcaagcgtgcaggcatctatgggggcttcctcctg
gcctgctatgatgaggagagtgaggagtaccaaagcatctgcaagataggcactggtttc
accgaggagagcttggagaaacactacaacttcctcaaggaacacgtgttgactcaaccg
cgtccctattaccgctgggacaacgcagtggctccggaccgttggctggcagctgtgcag
gtctgggaggtgaaatgtggggacctgtccatttcccctgtctacagggcagctgtgggg
ctggtggatgaggacaagggcatctcgctgcgcttcccgcggttcctgcgtgtgcgcggg
gacaagaaacctgaggaggccaccagcagcacgcaggtggccgagctctacaagaagcag
cagcagatccagaaccagcagcaggcagagaaaggggacgaggagttctattga
DBGET
integrated database retrieval system
