Meleagris gallopavo (turkey): 100550227
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Entry
100550227 CDS
T01523
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mgp
Meleagris gallopavo (turkey)
Pathway
mgp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100550227 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgp03019
]
100550227 (PNLDC1)
Enzymes [BR:
mgp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100550227 (PNLDC1)
Messenger RNA biogenesis [BR:
mgp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100550227 (PNLDC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
100550227
NCBI-ProteinID:
XP_019468424
Ensembl:
ENSMGAG00000012470
LinkDB
All DBs
Position
2:complement(44494135..44505150)
Genome browser
AA seq
532 aa
AA seq
DB search
MDVGAADFARCLPCLRDRVGRAAFLGLDMEFTGLHSAFPQNNQPSLFDSPAERYQKVRRS
VQRFTITQLGLAIFSEENSNKYVVHSYNFFLFPSTLGVMDAELTLSASSIQFLSHYGFDY
NKFLKDGIPYMNELQEKILSQRLLEGSWKVYSALNMNVVKKAIDEVTCWIAAAKEGDAMI
LQELSDSQMLDVQLVLRQALPNVWTQPLRDNEVLVKKVSPQHRRLLESSSHDSCRKELIL
TSARGFTNLFQIIVKAKKPLVGHNMLMDLCHLHDKFYNPLPESYEEFKKNIHHLFPVLID
TKTVTKSIWKNYQFPRVSNLLEVYEVLCSSDLNPMDPSCPVIDLASDSVRYAGKAAPHEA
AYDAFLCGSVLLKSAHLLLCRLTDDAAKADSSFSQYLTMLAEYLNKVNFIRGGVSSINFS
GEDASCRYPPPLVVCVRGWPRLDERQIYQELQPLCHFDIRRLSENQFILLSNRFKHVIRV
LHDYKDHPKLQISVYGRWRHSPHVNCLLKVSGIVALWSLLAFLLGGSPSCSP
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggggcggcggacttcgcgcgctgcctgccctgcctgcgggaccgcgtcggc
cgcgccgccttcctgggcctggacatggagtttactggcctacattcagctttcccacaa
aataaccagcccagcttgtttgactcgccagctgagcggtaccagaaggtcaggcggagc
gtgcagcgcttcaccatcacacagctggggctagcaatattctcagaagaaaattcaaac
aagtatgtggtgcattcgtacaatttctttctctttccctcaactttgggagttatggat
gctgaactcaccctctctgcatctagcattcaattcctgtctcactatggctttgactat
aataagttcctgaaagatggaatcccatacatgaatgagttacaggagaagatccttagc
cagcgtctcttagagggtagctggaaagtttacagtgctctgaacatgaatgtggtgaag
aaggctattgatgaagtgacctgttggatagcagcagccaaggaaggggacgcaatgatt
ctgcaggaactgagcgattcccagatgcttgatgttcaactggttctgcgacaagctctc
ccaaacgtttggacacagcctctcagagacaatgaggtactggtgaaaaaagtgagtccg
cagcaccgtcgacttctggaaagctcttctcatgactcctgccggaaggagctcattctc
acatctgcccggggctttaccaaccttttccagataattgttaaagctaaaaagcctctg
gtgggacacaacatgctgatggacctatgtcatctccatgacaagttctacaaccctctg
ccagaaagctatgaggaatttaaaaagaatattcaccacctgtttcctgtcctcatagac
accaagactgtaacaaaatccatctggaagaactaccagtttcctcgagtatctaatctt
ctggaggtgtatgaggttttgtgcagcagcgacctaaatcccatggatccatcgtgtcca
gtgattgatctcgcaagtgactcagtgcgatacgctgggaaggcggctcctcatgaggca
gcgtatgatgcatttctctgtggttcagttcttctgaaatcagctcatttgctgttgtgc
agattgacagacgatgcagcgaaggccgattcttctttctctcagtatctcaccatgtta
gctgagtatttgaacaaggtgaatttcatccgaggtggcgtctcaagcattaatttttct
ggggaagatgcttcctgccgatatccccctcccttggttgtctgtgttcgaggttggcca
cggctggatgaaaggcagatctaccaggagttacagcctctttgtcactttgatattaga
cggctttcagagaaccaattcattttgctctccaatagatttaagcatgtcattcgtgtt
ctgcatgattacaaagatcaccctaagctgcagatctctgtctatggccgctggaggcac
tctccgcatgtgaactgcctgttaaaagtctctggtattgtggcactttggtctctgttg
gcctttctgcttggaggatctccttcctgttcaccgtaa
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