Meleagris gallopavo (turkey): 104914455
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Entry
104914455 CDS
T01523
Symbol
SKIC2
Name
(RefSeq) LOW QUALITY PROTEIN: superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mgp
Meleagris gallopavo (turkey)
Pathway
mgp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104914455 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgp03019
]
104914455 (SKIC2)
Enzymes [BR:
mgp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104914455 (SKIC2)
Messenger RNA biogenesis [BR:
mgp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104914455 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
104914455 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
Ski2_N
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
ResIII
AstA_C
Motif
Other DBs
NCBI-GeneID:
104914455
NCBI-ProteinID:
XP_085066273
LinkDB
All DBs
Position
28:482587..493483
Genome browser
AA seq
1284 aa
AA seq
DB search
MGDPGGGSEKHFRSASGTSGYQPDIPLCAKGGGERFRVSARRSSGDGVGADRAAPPRAPA
PPPGTVGIGLRRALRTAAGSRPPRSTLPQGLPPFTPPLTAELEQRFLGTPSWLPPHQHER
AQRCWTRVPTPRALFVLEPTPVHSSVRALRDPGTGALQGFVEELHEDSGLTSSPDTSNVP
KWEGGLEEPPLELLHTQGPNEEDLDLENDLLTTPPGLKRGVEFQARAPGARGGAPSLRSV
LGALDSLELGGTEEEEKKQGEGAGGGAPSQQPADKGGVPSPTPPLRRADSLEELVMGEVL
VPPTTAAPPVPPQSEEEEWAVEEDCSVPVEDFEEKIPDPAFKWPFRPDAFQQRAALCLER
GQSLLVAAHTSAGKTAVAEYAIALARRHMTRAIYTSPIKALSNQKFRDFRATFGDVGLLT
GDVQLRPDASCLIMTTEILRSMLYNGSEVLRELEWVIFDEVHYINDAERGVVWEETLILL
PEHVGLVLLSATIPNALEFAQWVGRTKRRRLRVLSTRQRPVPLEHFLYTGGGGPPSPRDL
FLLLDARGGFSTQGYYAAVEAQKQRASKHAQSFGAKQPHGGGSGPGQDRAMWHSLVALLQ
AQGQLPAVAFTFSRGRCDAHAAALGRIDLSSAAEKGRVRGFVRRCLARLRGGDRRLPQVL
QMSELLERGIGVHHSGVLPLLKEVVEMLFSQGLVKLLFATETFAMGVNMPARTVIFDSIR
KHDGNNFRDLLPGEYVQMSGRAGRRGLDRTGTVIILCRGTVPEMADLHRVMLGRPSGLQS
QFRLTYGTILSLQRAAALSVEGLMRNSFGEFPLRRRAAAQQRRVAELQQELAALGEPPQE
GTLDDLPQYYEAVQXLLEARAELQRRVAQSVAGLKALAPGRVVVVCTPQHRNALGLILQV
TAESGGGRTITTMVLSEKPPEEGGPPPSPPPDAPYPEDVLLSRLFLPEGPPGAALEQLHP
EDLGGIVGRTLRANPPRLLEELRRRQTARGRKDPPSPELLSALQELLRMAGGAPGGLPLL
DPVGALQLRDPPAVEAAARARSLGAALGGFRCVHGPRFPQLYSQFAARRRLQEQVEQLQY
QLSDRSLLLLPEYRQRLGVLRALGYVAEGGAVQLPGRVAALLSCHELLLTELLLGNVLSP
LRPEEVAALLSCTVHPGRGEPPPKLPPNLQRGMEQIRAVAERVGRLQEEWGLPQSAEDYV
GQFGFGLAEVVYEWARGMPFAALAALAPLQEGAVVRCIQRLEELCRELRRAARMLGDPGL
AATMEAASGCIKRDIVFAASLYIQ
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atgggggatcccggggggggctctgagaagcacttccgctcggcatccggaacttccggt
tatcagccggatattccgctttgcgctaagggcgggggggaacgcttccgggtcagcgcc
cggcggagcagtggggatggagttggagcggatcgtgctgcccccccccgggcccctgca
cctccccctggcactgttggaattgggctgcgccgggcgctgcgaactgctgccgggtcc
cgccccccccgcagcacgctcccccagggcctcccgcccttcactcctcccctgacagcg
gagttggaacagcgcttcctggggaccccctcctggctgccgccccaccaacatgaacgg
gctcagaggtgctggacgcgggtgcccaccccccgggcactgtttgtgttggagccgacc
ccggtgcacagcagcgtgcgggcgctgcgggaccctggcacgggggctctgcagggcttt
gttgaggagctgcatgaagactcggggctcacctcttccccagacaccagcaacgtccct
aagtgggaaggtggtttggaggaaccccccctggagttgctccacacccaggggccaaac
gaagaggatttggaccttgaaaatgatttactgaccaccccacccgggctgaaacgtggt
gttgagtttcaggccagagcccctggagcccgggggggggcaccatcactccgtagcgtt
ttgggggcattggattccttggagttgggggggacagaagaagaggagaaaaagcagggg
gagggtgctggggggggtgccccctctcagcagcccgctgacaaaggaggggtgccttcc
cccacaccccccctgcgccgtgccgacagcctggaggagctggtgatgggggaggtgctg
gtgccccccaccacagccgccccccctgtgcccccacaaagcgaggaggaggagtgggcg
gtggaggaggactgcagtgtccctgtggaggacttcgaggagaagatcccagatccagca
ttcaagtggccgttccgccctgacgcgttccagcagcgcgcggcgctgtgcctggagagg
gggcagtcgctgctggtggctgctcacacctctgctggcaaaactgccgtggccgaatac
gccatcgcattggcacggcgacacatgacacgggccatctacacgtcgcccatcaaggcg
ctctccaatcagaagttccgcgacttcagagccacctttggggacgtggggctgctgaca
ggggacgtgcagctgcgccctgacgcctcctgcctcatcatgactactgagatcctgcgc
tcgatgctgtacaacggctctgaggtgctccgtgagctggagtgggtcatcttcgacgag
gtgcactacatcaacgatgctgagcgcggcgtggtgtgggaggagacgctgatcctgctg
cctgagcacgtggggctggtgctgctcagtgccaccatccccaatgccctcgagttcgcc
cagtgggtcggccgcacaaagcggcgccgcctgcgggtgctgagcacacggcagcgcccg
gtgcccctcgagcacttcctctacaccgggggcggcggtcccccctcaccccgagatctc
ttcctgctgctggatgcacggggtggcttcagcacccaggggtactacgccgcggtggag
gcacagaagcagcgggcgagcaaacacgcacagagctttggggccaaacagccccacggg
gggggcagcggccccgggcaggaccgtgccatgtggcactcgctggtggcgctgctgcag
gcgcaggggcagctgccagccgtggctttcaccttctcccgcgggcgctgcgatgcacac
gcagccgccctgggccgcattgacctcagctcagccgccgagaagggacgcgtgcggggc
ttcgtgcggcgctgcctggcccggctccgggggggggatcgccgcctgccccaggtgctg
cagatgtcggagctgctggaacgcggcatcggggtgcatcacagcggggtgctgccgctg
ctcaaggaggtggtggagatgctcttcagccaggggctggtcaagctgctctttgccacc
gagaccttcgccatgggggtgaacatgccggcacgcaccgtcatcttcgactccatccgc
aaacacgacggcaacaacttccgcgacctgctgccaggtgagtacgtgcagatgtcgggg
cgcgccgggcgccgtgggctggaccgcaccgggactgtcatcatcctgtgccgggggacg
gtgcccgaaatggccgacctgcaccgcgtcatgctgggccgcccgtcggggctgcagtct
cagttccgcctgacgtacggaaccatcctcagcctgcagcgcgcggccgcgctcagcgtg
gaggggttgatgcgcaacagctttggagaattccctctgcggcgccgcgccgcggcgcag
cagcggcgcgtggctgagctgcagcaggagctggcagcgctgggagagcccccgcaggag
ggaaccctggacgacctcccccagtactacgaggccgtgcggctgctggaggcgcgggcg
gagctgcagcgccgcgtggcgcagtcagtggcagggctgaaggcgttggcccccgggcgg
gtggtggtggtctgcaccccccagcaccgcaatgcgctgggactcatcctgcaggtgact
gctgaaagtggggggggccgcaccatcacaacaatggtgctgagtgagaaaccccccgag
gagggggggccgcccccctcgccccccccggacgccccctaccctgaggatgtgctgctg
agtcggctcttcctgcctgagggcccccccggagcagctctggagcagctgcaccccgag
gacttggggggcattgtggggcgcaccctgcgggcaaaccccccccggctgctggaggag
ctgcggcggaggcagacagcacggggaaggaaggacccccccagccccgagctgctctca
gccctgcaggagctgctgcgcatggcagggggggctccgggggggctgcccctgctggac
ccagtgggagccctgcagctgcgggacccccctgctgtggaggcagctgcccgtgcccga
agcctgggggcggccctgggggggttccgctgtgtgcacggcccccgctttccccagctg
tactcgcagtttgctgcccggcgccggctgcaggaacaggtggagcagctccagtaccag
ctgtcggaccgctccctgctgctgctgcccgagtaccgccagcgcctcggcgtgctgcgg
gctctgggttacgtggccgaggggggtgcggtgcagctccccgggcgtgtggccgcgctg
ctgagctgccacgagctgctgctgaccgagctgctgctgggcaacgtgctgagcccgctg
cgccccgaggaggtggccgcgctgctgtcctgcaccgtgcacccaggccggggcgagccg
cccccaaaactgcctcccaacctgcagcggggcatggagcagatccgcgccgtggccgag
cgcgtggggcggctgcaggaggagtgggggctgccccagagcgccgaggactacgtgggg
cagttcggcttcgggctggccgaggtcgtgtacgagtgggcacgcggcatgcccttcgcc
gctctggccgccctggctccgctgcaggagggcgcggtggttcgctgcattcagcgcctg
gaggagctgtgccgggagctgcgccgcgccgcgcgcatgttgggcgacccggggctggcg
gccaccatggaggcggcgagcggctgcatcaaacgggacatcgtcttcgccgcgagtctc
tacatccaataa
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