Pyricularia oryzae: MGG_03931
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Entry
MGG_03931 CDS
T01027
Name
(RefSeq) FRQ-interacting RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mgr
Pyricularia oryzae
Pathway
mgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MGG_03931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgr03019
]
MGG_03931
03041 Spliceosome [BR:
mgr03041
]
MGG_03931
03009 Ribosome biogenesis [BR:
mgr03009
]
MGG_03931
03016 Transfer RNA biogenesis [BR:
mgr03016
]
MGG_03931
Enzymes [BR:
mgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MGG_03931
Messenger RNA biogenesis [BR:
mgr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
MGG_03931
Spliceosome [BR:
mgr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
MGG_03931
Complex C
U4/U6.U5 tri-SnRNP related factors
MGG_03931
Ribosome biogenesis [BR:
mgr03009
]
Eukaryotic type
Pre-60S particles
Helicases
MGG_03931
Transfer RNA biogenesis [BR:
mgr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
MGG_03931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Epiplasmin
Motif
Other DBs
NCBI-GeneID:
2677161
NCBI-ProteinID:
XP_003719933
UniProt:
G4NH56
LinkDB
All DBs
Position
6:complement(2525744..2530065)
Genome browser
AA seq
1102 aa
AA seq
DB search
MADLFDVFDEQPEAPAVGLDRNSSDTKTKKTKKSKRDKSKDKSKKRKADGHVKNLGAQDN
GAEAQPDPQEDVEMANGTQPSTGDAGSEESSSDEHQDIKRRKKEGEADPILTDTFETAQS
RQVAAAEGFGTKEEDSLVLSHNIQHQVALPPDLDYVYVPLSEHKPPEEPARKYAFKLDPF
QSISVASIERDESVLVSAHTSAGKTVVAEYAIAHCLKRNQRVIYTSPIKALSNQKFRDFQ
AEFGDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEITREVGWVVFDEIHYMRDATRG
VVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHRQACHVVYTDFRPTPLQNYVFPA
GGDGIYIMVDEKGVFREKKFMEAIGSIAGKNDDDDSMPRQKGKGKNKKAVKNTVPDSKAD
ITKIIKMIMRRAYHPVIVFNFSKRECENLALKVSTLNFNHESEQKLVEDIFRNAIMSLSE
EDQGLPQIQHLLPLLKKGIGVHHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPA
KTVVFSQVKKFDGVKERPLTPSEYIQMSGRAGRRGLDDRGIVIMMIDDKLDPETAKGMVC
GQQDRLNSAFHLGYNMILNLQRIETVSPQYMLERCFYQFQNASSVPALEKKLIELQQQRD
AMVIPDESTVKDYHTVRQQIEAYKKDMEAVIQHPNNCLEFMQPGRLIRIKTPDGVDFDWG
VVVNFLPRKPVKFGEEEPPPQESYLMDVALFVSEDSISPPPHASVSKEGHIADGVEPSGS
VDHGRLEVVPCLLTCMVAISQIRIFMPKDMDHLGKSQVSHGLEEVQRRFPDGVPILDPIE
NMGIKDDSFKKLMRKIEVLESRLLSNPLHGSPNLPELWDKYKIKTELTSQIKETKRAINK
SYSIAQLDELKSRMRVLRRLNFINENEVVQMKARVACEISSTEGHELVISELLFNGFFNE
LEPEVCAAILSCFVFDEKMEGTPLKEDLDKLVREIHAQAKTIARISRESKLDVSDEQVVG
NLKWQLTETVLAWAKGRPFAEICKMTNAYEGSLVRIMRRLEELLRQMAEAGKVMGSEMLQ
KKFEKALSLISRDVVSAASLYL
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacttgttcgacgttttcgacgagcagccagaggcgccggcggtcggcctcgat
cgcaactcgtctgataccaaaaccaaaaagactaaaaagtccaaacgggataagagcaag
gataagagcaaaaagcgcaaggctgacggtcatgtgaaaaatttgggtgctcaggacaac
ggtgccgaggcgcagcctgatcctcaagaggacgttgaaatggctaacggcacccagccg
tccaccggtgacgccggctcagaggagtcctcttcggatgagcaccaagacatcaagcga
cggaagaaggagggcgaggccgatccgatccttaccgacaccttcgaaactgcccaatcg
agacaggttgcagcagcggagggcttcggcaccaaggaggaggattcactcgtgctttca
cacaacatccagcatcaagttgccttgccgccggatctcgactacgtctatgttcctttg
tcagagcacaagcctcctgaggaacccgcccgaaagtatgcattcaagctcgaccccttt
cagagcatatcagttgcttcgatcgagcgtgatgagagtgtgctggtttccgcgcatacc
agtgctggaaagactgtcgttgccgagtatgcaattgcgcactgcctcaagagaaatcag
agagtcatctacacgagcccgatcaaggcactcagcaaccagaagttccgcgacttccag
gccgagtttggcgatgttggtttgatgactggtgatgtcaccatcaacccgaccgccagc
tgccttgtcatgacgacagaaattttgcgctccatgttgtaccgcggttcagagatcact
cgcgaggtgggctgggttgttttcgacgaaatccactacatgcgcgacgcgactcgaggt
gtcgtgtgggaggagaccatcatcatgttgcctgacaaggtccgctatgtgttcttgtcg
gccacaatcccgaatgctttccaattcgccgaatggatagccaagatccaccgacaggcc
tgtcacgttgtttacaccgacttccgcccaacccccctccagaactatgttttccccgct
ggaggagatggcatctacattatggtggatgaaaagggcgtgtttagggagaagaagttc
atggaagccattggctccatcgctgggaaaaacgacgatgacgattcgatgccgcgccag
aagggcaagggcaagaacaagaaggctgtaaagaacaccgtaccggacagcaaggcagac
atcaccaagatcatcaaaatgatcatgaggagagcctaccacccagtcatcgtcttcaac
ttcagcaagcgcgaatgcgagaaccttgccctcaaggtgtcaacattaaacttcaatcac
gagtcagagcaaaagctggtcgaggatatcttcaggaacgctattatgtcactatctgaa
gaggaccaaggccttcctcaaatccagcacctgcttccgctgcttaagaagggtatcggt
gtccatcactctgggctcttgcccatcctgaaggagaccatcgagatcctctttcaggaa
aaccttatcaaggtgctctttgccacagaaaccttctccattggtttgaacatgccagcc
aagactgtcgttttcagccaagttaagaagtttgacggcgtgaaggagaggccgcttaca
ccatcagagtacatccaaatgtcggggcgcgccggtcgtcgtggtcttgatgatcgtggt
attgtcatcatgatgattgacgacaagcttgatcccgaaacggccaagggcatggtttgc
ggtcaacaggatcgtctaaactcggctttccacctaggatacaacatgatcctgaacttg
cagcgtattgaaaccgtatctcctcagtacatgctggagaggtgtttctaccagttccaa
aacgcttctagcgtgccagcattggaaaagaagctgatagagctgcagcaacaacgtgac
gccatggtgatccctgacgagtcaactgtcaaagattaccacaccgtccggcaacagatt
gaagcgtacaagaaggacatggaggccgtgatacaacatccaaacaactgcttggagttt
atgcaacctggacgattgatcagaatcaagaccccggacggcgttgactttgactgggga
gttgtggtcaattttttgccgcgcaagcctgtcaagtttggcgaggaggagccgccaccg
caagagtcgtatctcatggatgtcgccttgttcgtatcggaggatagcatctcgcccccg
ccccacgcatcggtttcgaaagaaggccacatcgcagatggtgtcgaaccaagcggttct
gtcgaccatggacggcttgaggtcgtgccatgtctcttgacttgcatggttgccatcagc
cagatccgcattttcatgcccaaggatatggatcaccttggcaagtcgcaggtcagccat
ggcttggaagaggtccagcgcaggttcccagacggagtaccaattttggatcctattgag
aacatgggcatcaaggacgattctttcaagaaacttatgcgcaagatcgaggttcttgag
tcacgcctgctttccaaccctctccatggctcgccgaatctcccagagttgtgggataag
tacaagatcaagacagagttgacgtcccagatcaaggagaccaagagagccatcaataag
tcatatagtattgcacagctcgatgagctcaaatcgcgcatgcgagttctccgccgcctc
aacttcatcaacgagaacgaggtagtgcagatgaaggctcgtgtggcttgcgaaatttcg
tctacggaaggccacgaattggtgatttcagagctgctgttcaacggtttcttcaatgaa
ttggagccagaagtttgcgctgccatcttgagctgctttgtctttgacgagaagatggag
ggcactcccttgaaagaggatcttgataagctggttcgcgaaatccatgcacaggccaag
acgattgcacgtattagtcgtgagagtaaattggacgtcagcgacgaacaggttgttgga
aatcttaaatggcaacttacggaaactgtgttggcatgggccaaaggcagaccttttgcc
gagatctgcaaaatgacaaatgcctacgagggttctttggtgcgtattatgcgtcgcctt
gaggagctgttgcggcagatggcggaagcaggcaaggttatgggcagcgagatgttgcag
aagaagtttgagaaggctctctcactgatatcacgagacgtcgtctcggctgccagtctc
tacctgtga
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