Methylocaldum gracile subsp. desertum: ACR2R6_16800
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Entry
ACR2R6_16800 CDS
T11793
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mgrd Methylocaldum gracile subsp. desertum
Pathway
mgrd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mgrd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACR2R6_16800 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mgrd03021
]
ACR2R6_16800 (rpoB)
03400 DNA repair and recombination proteins [BR:
mgrd03400
]
ACR2R6_16800 (rpoB)
Enzymes [BR:
mgrd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACR2R6_16800 (rpoB)
Transcription machinery [BR:
mgrd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACR2R6_16800 (rpoB)
DNA repair and recombination proteins [BR:
mgrd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACR2R6_16800 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
7TMR-HDED
DUF8806
BSH_YknX
ATG14
Motif
Other DBs
NCBI-ProteinID:
XWN71369
LinkDB
All DBs
Position
complement(3836757..3840833)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSFTEKKRIRNSFGKRRDVLEVPYLLATQVDSYKRFLQADVPPSKRVDEGLHAALRSV
FPIESHTGHAILEYVNYSLGEPTFDVKECQQRGANYAAPLRVLVRLVIYDREAPASAKVV
KDIKEQEIYMGEIPLMTDTGTFVVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFNA
RIIPYRGSWLDFEFDHKDCVYVRIDRRRKLPATVLLRALGYDNEQIIKLFFETNRFSFIK
EGILLDLIPERLRGDIASFDIKADGQMIVEKGHRITARHIRQMDKAGLKQLDVPRDYLYG
KILAHNVIVPSTGELVAKVNDEITEDLLSRIIAAGIEAIDTLYINDLDRGPYMANAMRID
TTETQLDALVEIYRMMRPGEPPAKEAAQTLFDNLFFSPDRYDLSAVGRMKFNRRLGRSEI
TGPGVLTKEDIIDVLRELINIRNGIGTVDDIDHLGNRRVRSVGEMVENQFRLGLVRVERA
VKERLSLADAENLMPQEIINAKPVAASIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALG
PGGLARERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLAVYARTNEYGFLETPYRKV
IDGIVTDEIEYLSAIEEGKYFIAQASAKVDENGRLIDDLVSCRHKDEFTLASADQINYMD
VSSRQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRTEKPLVGTGMERIVARDSGV
TVIAKRGGTVEFVDAGRIVVRVNDDETEAGVPGVDIYNLTKYTRSNQNTCINQKPLVKLG
DSVAKGDILADGPSTDMGELALGQNLLVAFMPWNGCNFEDSILISERVVQDDRFTTIHIE
EKTCVARDTKLGPEEITADIPNVGEAALAKLDESGIVYIGAEVKAGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMDGTVIDVQVFTRDGVKKDDRAKQIEQAEID
RVKKDLNDQLRIIEKDFYQRVEQMLLGKLAESGPNRLRSGEVITREYLEGLKQSQWLEIR
LQDEDLNVQLEAIAEQIAQQREEMNKRLEEKKKKIAMGDDLPPGVLKMVKVYLAVKRRIQ
PGDKMAGRHGNKGVISQIVPVEDMPYLADGTPVDIVLNPLGVPSRMNVGQVLETHLGWAA
KGLGLKIGKMLEAKAKIEETRQFLKEVYNCSGKNEDLDLLSDNEILELASNLRGGVPMAT
PVFDGATEDDIKTMLRLADLPESGQTRLTDGRTGEIFDRAVTVGYMYMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKI
YKNIVDGDHRMEAAMPESFNVLIKEIRSLGINIELEQD
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcctattctttcaccgaaaaaaaacgcattcgtaacagctttggcaagcgtcgtgac
gtacttgaagtcccttatcttttagcaacccaagtcgattcatacaagagatttctgcag
gctgacgttcctcccagcaagcgtgtcgatgagggtctgcatgccgcgttaagatcagtt
tttccgatcgagagccatactgggcatgccattctcgaatacgtaaattactccttgggc
gagcccacgttcgatgtcaaagaatgtcagcagcggggcgcgaattacgcggcccccttg
cgtgtgctggtgcgtttggtgatctatgaccgtgaggcgcctgccagtgccaaggtcgtg
aaggatatcaaagagcaggaaatttacatgggcgaaatcccgctcatgacggacacgggg
actttcgttgtcaatggaacggagcgcgtgattgtctcgcagctgcatcgttcgcccggc
gtgttcttcgatcatgatcgcggaaaaacccactcatccgggaagcttctgttcaatgcg
cggatcattccctatcggggatcctggctggacttcgagttcgatcacaaggactgtgtc
tacgtacgaatagaccgtcggcgaaagctgcccgccacagttcttttgcgggccctaggt
tacgataacgagcagatcataaaactgtttttcgagaccaatcgcttctcgtttatcaaa
gaaggcattctgcttgatttgattcccgaacgtttgcgtggcgacatcgccagtttcgac
atcaaggccgatggtcagatgatcgtagaaaaggggcatcggatcacggctcggcacatc
cggcagatggataaagcggggctgaagcaattggacgtgccgcgggattacctctatggc
aaaattctcgctcataatgtgatcgtcccgagcacaggagagttggtggccaaggtgaac
gacgagatcacggaggacctattgagccgcatcattgcggccggtatcgaggccatcgac
acgctttacatcaacgacctcgaccgcggcccgtacatggcgaacgccatgcggatcgac
acgaccgagactcagctcgatgcgctggtggaaatctaccgcatgatgcggcccggtgag
ccgccagccaaagaagccgcgcagacgctgttcgacaatcttttcttctccccggaccgc
tatgatctgtcggcggtcggtcggatgaagttcaatcgccgcctcgggcgttcggagatt
accggaccgggcgtactgacgaaagaagacataattgatgtcctcagggaactcatcaat
attcgtaacggcataggcacggtcgacgatatcgaccatctgggcaaccgccgtgtacgg
tccgttggcgaaatggtggagaatcagttccggctgggtctggtccgcgtcgagcgcgcc
gtcaaggagcgcctgtccctggcggatgccgagaacctgatgccgcaggaaatcatcaat
gccaaaccggtcgcggcatcgatcaaggagttcttcggctcgagccagttatctcagttc
atggaccagaacaatccgttgtccgaggtgacccacaagcgccgtgtttcggccttggga
ccgggcggcctcgctagggagcgtgcgggtttcgaggtgcgagacgtccatacgacccac
tacgggcgcgtttgtcccatcgaaacgccggaaggacccaatatcggtctgatcaattca
ttggcggtttatgcgcgtaccaatgaatacggatttctcgaaacgccataccgtaaggtg
atcgacggcatcgtcaccgacgaaatcgaatatctttccgcgattgaagagggcaagtat
ttcattgctcaggccagcgccaaggtggatgaaaatggtcgactgatcgatgacctggtt
tcttgccggcacaaagacgagtttacccttgcatcggccgatcaaatcaattacatggac
gtgtcgtcacgccagatcgtgtcggtcgcggcatcgctgatcccgttcctggagcatgac
gacgccaaccgggcattgatgggatccaacatgcagcgccaggccgtaccgacactgcgg
accgagaagcccttggtcggcacgggcatggagcgcatcgtagccagagattccggggta
acggttatcgccaagcgtggcgggacggtggagttcgtggacgccggacgtatcgtcgtg
cgtgtgaacgacgacgaaaccgaagcaggcgtaccgggcgtcgatatctacaacctgacc
aagtacacgcggtcgaaccagaacacctgtatcaatcaaaagcccctagtaaaactgggt
gacagcgtcgcgaagggcgacatcctcgcagacggaccgtccaccgacatgggtgaacta
gccttgggtcagaaccttctggtggcgttcatgccctggaatggatgcaatttcgaggac
tctatcctgatttccgaacgagtggtgcaggacgaccgcttcacgaccatccatatcgag
gaaaaaacttgcgtcgctcgcgatactaaactcggaccggaagaaatcactgccgatatt
ccgaatgtcggcgaagccgcgctggccaagctggatgagtccgggatcgtttatatcggg
gccgaggtaaaggcgggcgatattctggtggggaaggtcacgcccaaaggcgaaacccag
ctgacccctgaagaaaaactgctccgggccatattcggcgagaaggcgtcggatgtgaaa
gacacatctctgcgcgtgccctccggcatggacggcactgtcattgacgtccaagtgttc
actcgtgacggcgtcaaaaaggacgatcgggcgaagcagatcgagcaggcggaaatcgac
cgggtcaagaaggacctgaacgaccagttgcggatcatcgaaaaggacttttaccagcgt
gtggagcagatgctgctgggcaagctggccgaatcgggcccgaacaggctgcgctccgga
gaggtaatcacccgcgagtatctggagggactcaaacagtcccagtggctggagattcgc
ctacaagacgaagacttgaacgttcaactcgaagccatcgccgagcagatcgctcagcag
cgcgaggaaatgaacaagcggctggaggaaaaaaagaaaaagatcgccatgggcgatgat
ttgccgcccggagtcttgaagatggtcaaggtctatctggccgtcaagcgtcgcatccag
ccgggtgacaagatggcgggacgccacggtaacaagggtgttatttctcagatcgtcccc
gtcgaggatatgccttatcttgcggacggaactccagttgacatcgtgctcaacccgcta
ggcgtgccttcgcgtatgaatgtcggtcaggtattggaaacccatcttggctgggctgcc
aaagggttggggctcaagatcggcaagatgctggaagccaaggccaagatcgaggaaacg
cgccagttcttgaaggaagtctataactgcagtggcaagaacgaagatttagacctgttg
tccgataacgagattctcgaactcgcctccaacctcaggggaggggtgcccatggctacg
ccggttttcgacggtgccaccgaggacgatatcaagaccatgttgcgcttggcggatcta
ccggaaagcggccaaacgcggctaacggacggacgtaccggcgaaatcttcgatcgggcc
gtcaccgtcggctatatgtatatgctcaagcttaaccatctggtcgacgataagatgcat
gcccgctccaccggaccgtacagtctggttacgcagcaacctttgggtggcaaggcccag
ttcggcggtcagcgcttcggggagatggaagtctgggcgctggaagcttatggcgcagcc
tatacccttcaggaaatgctcacggtcaaatcggacgacgtcaccgggcgtaccaagatc
tacaagaacatagtcgatggtgaccatcgcatggaggcggccatgcccgagtcgttcaac
gtgttgatcaaggagattcgatccctcggcatcaacatcgagttggaacaggactaa
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integrated database retrieval system
