Magnetospirillum gryphiswaldense MSR-1: MSR1_00440
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Entry
MSR1_00440 CDS
T05662
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mgry
Magnetospirillum gryphiswaldense MSR-1
Pathway
mgry03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mgry00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSR1_00440 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mgry03021
]
MSR1_00440 (rpoC)
03400 DNA repair and recombination proteins [BR:
mgry03400
]
MSR1_00440 (rpoC)
Enzymes [BR:
mgry01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSR1_00440 (rpoC)
Transcription machinery [BR:
mgry03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MSR1_00440 (rpoC)
DNA repair and recombination proteins [BR:
mgry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MSR1_00440 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AVM72570
LinkDB
All DBs
Position
44848..49335
Genome browser
AA seq
1495 aa
AA seq
DB search
MNELMKIFGQASGTQAFDQIRISIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLCDMTLKDLERILYFENYVVVEPGLTPLKIRELLSEEQYMRAVDEYGEDSFTAK
IGAEAIRDMLCAIDLESEKDKLKIDLKETTSEAKRKKLVKRLKLVEAFMESGSRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEIIVRNEKRML
QEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFVYSKLELYGMATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYITMERDEQPGLALKITSIDELKVGIAA
GTLFFVDRQLPTNVVDTKDLDALLAKIANRDITAHRAVRVTSRDMLEAGLNRRDIRVYNI
DKPGTPFASTDVDAIEKAVKDGKAVLYRVPVFRDMKEIDAALADKVLTLHQHIKARYNNV
DQDCKPIVEIVETTAGRMMLSEILPRNPNVPFSSINRLLTKKDIQNVIDLVYRHCGQKET
VIFADRVMGLGYSNAFKAGISFGKDDMVIPPAKEVLVSETEAKAKEYEQQYQDGLITQGE
KYNKVVDAWSKCTDDVADAMMKEISRIEPGRMVNSVYMMAHSGARGSAAQMKQLAGMRGL
MAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQD
AIIVEEDCGTINGLTVSAVVEGGEVISPLAERILGRTASRDIVDPATGRVIVAASELIGE
SEVEQIDEAGIEVVNIRSVLTCEAKEGVCGCCYGRDLARGTRVNVGEAVGVIAAQSIGEP
GTQLTMRTFHIGGAAQRGAEQSAIEATGDTTVQLLNKNVVTNSSGAKIVMSRNCELLLLD
AGGRERARHRVPYGAKLLMEDGQKVTKGTKMAEWDPYTLPIITETNGIAHFVDLVEGLSI
REVVDEATGIASKVVVDWKQQPRGSELRPRVELRDDKGQPVTLPNGLEARYFLSVDAILS
VENQSKLHAGDVLARIPREGSKTRDITGGLPRVAELFEARKPKDHAIISDIDGRVEFGKD
YKSKRRILVVPEDGDPMEYLIPKGKHVSVQEGDYVRRGDSLMDGNPVPHDILRVMGVEAL
AQYLINEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDPGDTTFLVGEQIDRQEFEHEN
RKAIKEQGRPASGTPVLQGITKASLQTHSFISAASFQETTRVLTEAAVSGKVDTLNGLKE
NVIVGRLIPAGTGAVMNRLREIAAKRDRDMQIEAEGGENPALPAGGAAAPVAPAE
NT seq
4488 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaattgatgaagatctttggtcaggccagcggtacccaggccttcgaccagatc
cgtatttccatcgcctcccccgagcgcatccgctcgtggtcgtatggcgagatcaagaag
ccggaaaccatcaactaccgcaccttcaagccggagcgcgacggtctgttctgcgcccgt
atctttggcccgatcaaggattacgaatgcttgtgcggcaagtacaagcggatgaagtat
cgcggcatcatctgcgaaaagtgcggcgtcgaagtgacgctggccaaggtccggcgcgag
cgcatgggccatatcgagctggccagcccggtcgcccatatctggttcctcaagtcgctg
cccagccgtatcggcctcctgtgcgacatgacgctcaaggaccttgagcgcatcctgtac
ttcgaaaactacgtggtggtcgagcccggcctgacgccgttgaagatccgcgagctgctg
tcggaagagcagtacatgcgcgcggtcgacgagtatggcgaagacagctttaccgccaag
atcggcgccgaggccatccgcgacatgctgtgcgccatcgatctggagtccgaaaaggac
aagctcaagatcgaccttaaggaaaccacctcggaagccaagcgcaagaagctggtgaag
cgtctgaagctggtggaagccttcatggaatcgggctcgcgtcccgaatggatgatcctg
gaagtcattccggtcattccgccggaactgcgtccgctggtgccgctggacggtggccgt
ttcgccacctcggatctgaacgatctgtatcgccgcgtcatcaaccgcaacaaccgcttg
aagcgtttgatcgaactgcgcgctcctgaaatcatcgtgcgcaacgaaaagcgcatgttg
caggaagcggttgacgccctgttcgacaacggtcgccgtggccgcgccatcaccggcgct
aacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgt
cagaacctgttgggtaagcgcgtcgattattccggtcgttcggtcatcgtcgtcggtccc
gaactgaaattgcatcagtgcggtctgccgaagaaaatggcgctcgagctgttcaagccg
ttcgtctattccaagctggaactctatggcatggccaccaccatcaaggcggccaagcgc
atggtggaaaaggaacgtcccgaggtgtgggacatcctggaagaagtcatccgcgaacat
ccggtcatgctcaaccgcgcgccgaccctgcaccgtctgggcatccaggcgttcgagccg
gtgctgatcgaaggcaaggccattcagctgcatccgctggtttgtactgccttcaacgcc
gatttcgacggtgaccagatggccgtgcacgttcccctgagccttgaggcccagttggaa
gcgcgcgtgttgatgatgtcgaccaacaacatcctgtcgccggctaacggcaagccgatc
atcgtgcccagccaggatatcgttctcggtatctattacatcaccatggaacgcgacgag
cagccgggtctggcgctcaagatcacttcgatcgacgagttgaaggtcggcatcgccgcc
ggcaccttgttcttcgtcgatcgtcagctgccgaccaacgtggtcgacaccaaggatctc
gacgccctgctggccaagatcgccaaccgcgatatcaccgcccatcgtgccgtccgcgtc
accagccgtgacatgctggaagccggcctcaaccgtcgtgacattcgcgtctacaacatc
gacaagcccggcacccccttcgcctcgaccgatgtcgatgccatcgagaaggcggtcaag
gacggcaaggccgtgctgtatcgggtgccggtgttccgtgacatgaaggaaatcgacgcc
gccctggccgacaaggtgctgacgctccatcagcacatcaaggcccgctacaacaacgtc
gatcaggattgcaagccgatcgtcgagatcgtcgagaccaccgccggccgcatgatgctg
tcggaaatcctgccgcgtaaccccaacgtgccgttctcgtccatcaaccgtctgttgacc
aagaaggacatccagaacgtcatcgatctggtctaccgccattgcggtcagaaagagacg
gtgatcttcgccgaccgcgtcatgggtctgggctattccaacgccttcaaggccggtatt
tcgttcggcaaggacgacatggtgatcccgccggccaaggaagtgctggtgtcggaaacc
gaggccaaggccaaggaatacgagcagcagtaccaggacggtctgatcacccagggcgaa
aagtacaacaaggtggtcgacgcctggtccaagtgcaccgacgacgtcgccgacgccatg
atgaaggaaatcagccgcatcgagccgggccgcatggtcaactcggtgtacatgatggcc
cattcgggtgcccgtggttccgccgcccagatgaagcagctggccggcatgcgcggcctg
atggccaagccgtcgggcgaaatcatcgagaccccgatcatctccaacttcaaggaaggc
ctgaccgtgctggagtacttcaactccacccacggcgcccgtaagggtctggccgatacc
gccttgaagacggcgaattccggttacctgacccgtcgtctggtcgacgtcgcccaggac
gccatcatcgtcgaggaagattgcggcaccatcaacggcctgaccgtctcggcggtggtc
gagggcggtgaagtgatcagcccgctggccgaacgtatcctgggccgtaccgcgtcccgc
gatatcgtcgatccggccaccggtcgggtcatcgtcgccgccagcgaactgatcggcgag
tcggaagtcgagcagatcgacgaagccggtatcgaagtggtcaacatccgctcggtgctg
acctgcgaggccaaggaaggcgtctgcggttgctgctatggccgcgatctggcccgtggc
acccgcgtcaatgtcggtgaagcggtcggcgtcatcgccgcccagtccatcggcgagccc
ggcacccagctgaccatgcgtaccttccacatcggtggtgcggcccagcgcggcgccgag
caatcggctatcgaagccaccggcgacaccacggttcagctgttgaacaagaacgtggtg
accaactcgtcgggcgccaagatcgtcatgagccgcaactgcgaattgttgctgctggat
gccggcgggcgcgaacgtgcccgtcaccgcgtcccctatggcgccaagctgctgatggag
gacggccagaaggtcaccaagggcaccaagatggccgagtgggatccctataccctgccg
atcatcactgaaaccaacggtatcgcccatttcgtcgatctggtggaaggcttgtccatc
cgcgaggtggtcgacgaagccaccggcatcgccagcaaggtggtggtcgactggaagcag
cagccgcgtggttccgaactgcgcccgcgcgtcgaattgcgtgacgacaagggccagccg
gtgaccctgcccaacggcctggaagcccgctacttcctgtcggtggacgccatcttgtcg
gtggaaaaccagtccaagctgcatgccggcgacgtgttggcccgcattccgcgtgaaggc
tcgaagacccgtgacatcaccggcggtctgccgcgtgtggccgagttgttcgaagccagg
aagcccaaggaccacgccatcatctccgacatcgacggccgcgtcgaattcggcaaggac
tacaagtccaagcgccgcattctggtggtccccgaggacggtgatccgatggaatacctg
atccccaagggcaagcacgtgtcggtgcaggaaggcgactatgtgcgtcgcggcgattcg
ctgatggacggcaaccccgttccgcacgacatcctgcgcgtcatgggcgtggaagccctg
gcccagtatctgatcaacgaaatccaggaggtctatcgtctccagggcgtgaagatcaac
gacaagcacatcgaggtgatcgttcgccagatgctgcaaaaggtcgagatcaccgatcct
ggcgacaccaccttcctggtcggtgaacagatcgaccgtcaggagttcgagcacgagaac
cgtaaggcgatcaaggaacagggccgcccggcttcgggcaccccggtgctgcaaggcatc
accaaggcgtccttgcagacccattccttcatctcggcggcgtcgttccaggaaaccact
cgcgttctcaccgaggcggcggtttccggcaaggtcgacaccctgaatggcctgaaggaa
aacgtcatcgtcggtcgcctgatccccgccggtaccggtgcggtgatgaaccgtctgcgc
gaaatcgccgccaagcgtgatcgcgacatgcagatcgaggccgaaggtggtgaaaacccg
gctttgccggctgggggcgcagcagccccggtggctccggctgagtaa
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