Magnetospirillum gryphiswaldense MSR-1: MSR1_07260
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Entry
MSR1_07260 CDS
T05662
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mgry
Magnetospirillum gryphiswaldense MSR-1
Pathway
mgry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSR1_07260 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgry03019
]
MSR1_07260 (rne)
03009 Ribosome biogenesis [BR:
mgry03009
]
MSR1_07260 (rne)
Enzymes [BR:
mgry01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MSR1_07260 (rne)
Messenger RNA biogenesis [BR:
mgry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSR1_07260 (rne)
Ribosome biogenesis [BR:
mgry03009
]
Prokaryotic type
rRNA processing factors
MSR1_07260 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AVM73232
LinkDB
All DBs
Position
complement(721875..724664)
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AA seq
929 aa
AA seq
DB search
MVKRMLIDATHPEETRVVVVNGTRLEELDVETSTKKQLKGNIYLAKVVRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYFQIPVADRQALLAAQKAEAMRESSQDSDDDGAEDGNAEGESQ
SDAGGEAAESDAAPTENGDEAPPKTVETVGGADEVSEQEQERRRARLLRNYKIQEVIKRR
QIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGVSRKITSATDRRRLKAIAS
ELDCPEGMAVIVRTAGSERSKTEIKRDYEYLLRAWDSVRDLTLKSSAPSLVYEEASLIKR
SIRDLYARDIDEVLVDGDEGYRLAKDYMRMLTPSHAKKVQPYKDPVMPMFHRYQVESQLD
AMHSPIVQLRSGGYIVISQTEALVAIDVNSGRSTKERHIEETAFKTNVEAAEEIARQMRL
RDLAGLVVIDFIDMEENRNNHAVERRLKDALKNDRARIQVGKISAFGLLELSRQRLRPSL
QETTFSPCPHCAGTGLVRAVESSAVHVLRAIEEEGIRRRSAEVTVYVPSQIALYILNQKR
DALAAIEERYQFRVYLLGDDELIAPNLRMERVKAENRPEEPRPIPVQDIPLSVPEEDEEA
EEEAAEEEVVVEAGEAAADRDGDTDGEGRKRRRRRRRRRKGGEQGADQNAGGEEDGAEAD
AEGEGEGIESPEGEASAEDGDEDGDSDRVEGETDEERRKRRRGRRGGRRRRRNRDGSEAP
QAEEGSVPDVSLISNPDAVADVFAMAEAAAEAEAEARANPAPAQEATATEGEEKPKRSRG
RARTKPEGEEATAETGDEAGEKPKRRSRAKAKPESEETAPEQGGETEEKPKRRTRAKAEP
SGTADAEAAVKKPRSRTKAKAEDKPVTEEPALAAEPVPAPQQAEQAVAEPVIEAAAEPVA
PNPVPAQAIEEAPAPAVPARRGWWNKLVD
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggtcaagcgtatgctcatcgatgccacacacccggaagagacccgggtcgtcgtggtc
aacggcactcgactggaagaactggacgtcgagaccagcaccaaaaagcagcttaagggc
aacatctatctggccaaggtggttcgcgtcgagccgtccttgcaggccgctttcgttgat
tacggcggcaaccgccacggtttcctcgccttcagcgaaatccacccggattatttccag
atcccggtggccgaccgtcaggccttgctggccgcgcaaaaggccgaggccatgcgcgaa
agcagccaggacagcgacgatgacggtgccgaagacggcaacgccgagggcgagagccaa
agtgatgccggcggcgaagccgccgaatccgacgccgccccgaccgaaaacggcgatgaa
gccccgcccaagacagtggaaaccgtcggcggcgccgacgaggtgagcgagcaggaacag
gagcgccgtcgcgcccgcctgctgcgcaattacaagattcaggaagtgatcaagcgccgc
cagatcatgctggtgcaggtggtcaaggaagagcgcggcaacaagggcgcggcgctgacc
acctatctgtcgctggccggtcgctattgcgtgctgatgcccaacaccgcccgcggcggt
ggggtgtcgcgcaagatcaccagcgccaccgaccgtcgccgcctgaaagccatcgccagc
gagctggattgcccggaaggcatggcggtgatcgtccgtaccgccggctcggaacggtcg
aagaccgagatcaagcgcgattacgaatatctgctgcgcgcctgggacagcgtgcgcgac
ctgacgctgaaatcgtcggcgccgtcgctggtctatgaagaagccagcctgatcaagcgg
tccatccgcgatctctacgcccgcgacatcgacgaagtgctggtggacggcgacgaggga
taccgtctggccaaggactacatgcgcatgctgactcccagccatgccaagaaggtccag
ccgtacaaagatccggtaatgcccatgttccaccgctatcaggtggaaagccaactcgac
gccatgcattcgcccatcgtgcaattgcgctcgggcggttacatcgtcatcagtcagacc
gaggccctggtggccatcgacgtcaattcgggccgttccaccaaggaacgtcacatcgaa
gagacggcgttcaagaccaatgtcgaagccgcggaagaaatcgcccgccagatgcgtctg
cgcgatctggccggtctggtggtcatcgacttcatcgacatggaggaaaaccgcaacaac
catgcggttgaacgccgcctgaaggacgcactgaagaacgaccgcgcccgcatccaggtg
ggcaagatcagcgccttcggcctgctggaattgtcgcgccagcgtctgcgcccgtccttg
caggaaaccaccttctcgccctgcccccattgtgccggcaccggtctggtgcgggcggtg
gaatcgtcggcggtgcatgtgctgcgcgccatcgaggaagagggcattcgtcgccgttcg
gcggaagtcaccgtctacgtgccgtcgcagatcgcgctttatattcttaaccaaaagcgc
gacgccctggccgccatcgaggaacgctatcagttccgcgtctatctgctgggtgacgac
gaactgatcgcccccaacctgcgcatggagcgagtcaaggccgagaatcggcccgaggaa
ccccgccccatcccggtgcaggatatcccgctcagcgtgccggaagaggacgaggaagcg
gaagaggaagccgccgaggaagaagtcgtggtcgaggccggcgaagccgccgccgatcgt
gacggcgacaccgatggcgagggccgcaagcgtcgccgccgtcgccgccgtcgtcgcaag
ggcggcgaacagggtgccgatcaaaatgccggaggcgaggaggatggcgccgaagccgac
gccgaaggcgagggcgaaggcatcgaatcgccggaaggcgaagccagcgccgaagatggc
gacgaggatggcgattccgaccgcgtcgagggcgaaaccgatgaagagcgccgcaagcgt
cgccgcggtcgtcgcggtggccgccgccgccgccgcaaccgcgacggcagcgaagcgccg
caggccgaggaaggcagcgtccccgacgtctcgctgatttccaaccccgacgccgtcgcc
gacgtcttcgccatggctgaagccgccgccgaggcggaagcggaagccagggctaacccg
gctcccgcccaggaggctaccgccaccgaaggcgaggaaaagcccaagcgcagccgtggc
cgcgccaggaccaagccggaaggcgaagaagccacagcggaaactggtgacgaggccggg
gaaaagcccaagcgccgtagccgcgccaaggccaagccggaatccgaagaaaccgcgccg
gaacagggtggcgagaccgaggaaaagcccaagcgccgtactcgcgccaaggccgagccg
tcggggaccgccgacgccgaggcggcagtgaagaagccgcgtagccgtaccaaggccaag
gccgaggacaagccggtgacggaagaacccgcacttgccgccgagccggtgcctgcgccg
caacaagccgaacaagcggtcgccgaaccggtgatcgaggctgcggcagagccggtggcc
cccaatccggtccctgcgcaagcgatcgaagaagccccggccccggcggttcccgcccgt
cgcggctggtggaacaaactggtcgactaa
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