Magnetospirillum gryphiswaldense MSR-1: MSR1_18130
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Entry
MSR1_18130 CDS
T05662
Symbol
rnd_1
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mgry
Magnetospirillum gryphiswaldense MSR-1
Brite
KEGG Orthology (KO) [BR:
mgry00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mgry03016
]
MSR1_18130 (rnd_1)
Enzymes [BR:
mgry01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
MSR1_18130 (rnd_1)
Transfer RNA biogenesis [BR:
mgry03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MSR1_18130 (rnd_1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PV-1
Motif
Other DBs
NCBI-ProteinID:
AVM74305
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Position
1906882..1908081
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AA seq
399 aa
AA seq
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MPMIADTAELAAFCQRLSSAPYITVDTEFMREKTYYPQLCLVQLAGPDEARAVDPLAPGM
DLAPLFELMANPNVLKVFHAARQDVEIFLHLSGAVPAPLFDTQVAAMVCGFGDSVGYETL
ASQLAKARIDKSQRFTDWALRPLTEKQVQYALADVTHLRVAYEKLVRKLERNGRLDWLVD
EMAELASPDTYRTDPENAWKRLKPRSSSPKFLAVLKELAAWREREAQERDIPRQRMLRDE
TLMEIAAHHPANVDELARTRGMGKGMVEGRMGTALLDAVKRGLALPEDQIPKPPERVELP
RGLGPVVDLLKVLLKMKCDAHGVASKLVANSADIEAIAADDHAEIPALHGWRRDLFGEDA
LALKHGRLALGFCTDGRKLRLVPMDPVEPQCAPALVEVD
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgcccatgatcgccgataccgccgaactcgccgctttttgccagcgtctttcttcggcc
ccctacatcaccgtcgacaccgaattcatgcgggaaaagacctattacccgcagctgtgt
ctggtgcaactggccggaccggacgaggcgcgcgccgtcgatccgctggcgcccggcatg
gacctggcgccgttgttcgaactgatggccaatcccaatgtcctgaaggtgttccacgcc
gcccgccaggacgtggaaatcttcctgcacctctcaggcgcggtgccggcgcccttgttc
gacacccaggtcgccgccatggtctgtggcttcggcgattcggtcggctacgagaccctg
gccagccaattggccaaggcccgcatcgacaaatcccagcgcttcaccgattgggcgctg
cgcccgctgacggaaaagcaggtgcaatacgccctggccgacgtcacccatctgcgagtg
gcctatgaaaagctggtgcgcaagctggaacgtaacggtcgccttgactggctggtggac
gaaatggccgagctggccagccccgacacctatcgcaccgatcccgaaaacgcctggaag
cggctgaagccccgctccagcagcccgaaattcctggcggtgctgaaggaattggccgct
tggcgcgagcgcgaggcgcaggagcgcgatattccgcgccagcgcatgctgcgcgacgaa
acgctgatggagatcgccgcccaccaccctgccaacgtggatgaactggcccgcacccgc
ggcatgggcaagggcatggtcgaaggccgcatgggcactgcccttctagacgccgtcaaa
cgcggactggccctgccggaagaccagattcccaagccgccggaacgggtggaactgccg
cgcggcctggggccggtggtcgatctgttgaaggttctgctgaagatgaaatgcgacgcc
cacggcgtcgccagcaagctggtggccaattccgccgatatcgaagccatcgccgccgac
gaccatgccgaaatcccggccctgcacggctggcgccgcgacctgtttggcgaggacgcc
ctggcgctgaagcatggccgtctggccctgggcttttgcaccgacgggcgcaagctgcgg
ctggtgcccatggacccggtcgagccccaatgcgcccccgccctggtggaagtggactga
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