Magnetospirillum gryphiswaldense MSR-1: MSR1_19120
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Entry
MSR1_19120 CDS
T05662
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mgry
Magnetospirillum gryphiswaldense MSR-1
Brite
KEGG Orthology (KO) [BR:
mgry00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mgry03032
]
MSR1_19120 (topA)
03400 DNA repair and recombination proteins [BR:
mgry03400
]
MSR1_19120 (topA)
Enzymes [BR:
mgry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MSR1_19120 (topA)
DNA replication proteins [BR:
mgry03032
]
Prokaryotic type
DNA Topoisomerases
MSR1_19120 (topA)
DNA repair and recombination proteins [BR:
mgry03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MSR1_19120 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
AVM74401
LinkDB
All DBs
Position
complement(1996717..1999377)
Genome browser
AA seq
886 aa
AA seq
DB search
MKVVVVESPAKAKTINKYLGSDFQVLASYGHIRDLPAKDGSVRPDEGFAMDWEADAKSER
QIKEIANAVKKADKLFLATDPDREGEAISWHVQAVLEAKGVLKGKEVKRVVFNEITKSAV
TEAMRNPREVHQDLVDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICER
ETEIESFKSQEYWTLAADFLTAKGAMITAGLTHLNGVKLDKFALGNETSALAAKAAIEAA
SFTVASVERKKAKRNPYAPFTTSTLQQEASRKLHYGAQKTMQLAQRLYEGVDIGGETVGL
ITYMRTDGVQMAAEAIAATRDLIAKDFGKDYVPSAPRLYKTKAKNAQEAHECIRPTDLFR
RPDQVARYLDRDQLRLYELIWKRTVASQMAAAELDQVAVDVTSSGKDIVMRATGSVVVFE
GFLKVYREDRDDSPAPGAEDDESERLLPDVTEGEAMARQDVRADQHFTQPPPRFSEASLV
KRMEELGIGRPSTYASILSVLQDRNYVRLDQRRFIPEDRGRLVTAFLESYFGRYVEYNFT
ADLENQLDEVSDGKINWKKVLEDFWRQFQGAVEGTKELRVSEVIEKLDAELGAHFFPDDG
TGHDPRLCPLCNAGRLSLKLGKFGAFIGCANYPECRYTRPLAVAGEGGEGGGEPLPDGPK
ELGIEPGSGEPVTLRKGPYGWYVQLGEGAKPKRVSLYKGLEPGAIDLEIGLKLLALPRDV
GEHPETRKMIKAGVGRFGPYLLHDGVYKSLAKDDDVLTVGMNRAVELLSQAKGKAAGPLK
TLGEHDGKPVTVHEGRYGPYVSRDGVHATLPKGTDPLTVTLEQALPLIAAKAAKAPAKKP
ARKAAAPKKAAAEDGEATVTKKAPAKKAAAKKPAAKKAPAKKKAAG
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtcgtcgtcgtcgaatctcccgccaaagccaagaccatcaacaagtatcttggc
tcggacttccaggtgctggcctcgtacggccatatccgcgatctgccggccaaggacggc
tcggtccgcccggacgagggctttgccatggactgggaggccgacgccaagagcgagcgc
cagatcaaggaaatcgccaacgccgtcaagaaggccgacaaactgttcctggccactgac
ccggatcgcgagggggaagccatctcgtggcacgtccaggcggtgctggaagccaagggc
gtgctgaagggcaaggaagtcaagcgggtggtcttcaacgagatcaccaaatccgccgtc
accgaggccatgcgcaacccgcgcgaggtgcaccaggatctggtcgacgcctatctggcc
cggcgtgcgctcgattatctggtcggtttcaccctgagtccagtgctgtggcgcaagctg
ccgggctcgcgctcggccgggcgcgtgcaatcggtggcgctcaggctgatctgcgaacgc
gaaaccgagatcgagagtttcaaaagccaggaatactggaccctggccgccgatttcctg
accgccaagggcgccatgatcaccgccggcctgacccatctgaacggggtcaagctggac
aagttcgccctgggcaacgagacttcggctttggccgccaaggcggcgatcgaagcggcc
agtttcaccgtcgccagcgtcgagcgcaagaaggccaagcgtaacccctacgcccccttc
accacctcgaccctgcaacaggaagccagccgcaagctgcattacggcgcgcagaagacc
atgcaactggcccaacgcctgtatgaaggcgtcgatatcggcggcgagacggtgggtctg
atcacctatatgcgtaccgacggcgtacagatggccgccgaggccatcgccgccacccgc
gacctgatcgccaaggatttcggcaaggattacgtgccctccgccccgcgtctttataag
accaaggccaagaacgcccaggaagcgcatgaatgcatccgtcccaccgatctgttccgc
cgcccggatcaggtcgcccgttatctcgaccgcgaccagctgcgcctttatgaactgatc
tggaagcgtaccgtcgccagccagatggccgccgccgaattggatcaggtggccgtcgat
gtgaccagctctggcaaggacatcgtcatgcgcgccaccggttcggtggtggtgttcgag
ggcttcctgaaggtctatcgcgaggaccgcgacgacagtccggcgcccggggccgaggac
gacgaatctgaacgcctgttgcccgacgtcaccgagggcgaggccatggcccgccaggac
gtgcgcgccgaccagcacttcacccagccgccgccgcggttctcggaagcatcgctggtc
aagcgcatggaagaactgggcatcggtcgcccgtccacctatgcctcgatcctgtcggtg
ttgcaggaccgcaattacgtgcgtctggaccaacgccgcttcatccccgaggatcgcggg
cgtctggttaccgccttcctggaaagctatttcggtcgctacgtcgaatacaatttcacc
gccgatctggaaaaccagttggatgaagtttccgacggcaagatcaactggaaaaaggtt
ctggaagacttctggcgccagttccagggcgccgtcgagggcaccaaggaattaagggtg
tcggaagtcatcgaaaaactggacgctgaactgggggcgcatttcttccccgatgacggc
accggtcacgatccgcgcctgtgcccgctctgcaatgccgggcggctgtcgttgaagctg
ggcaagttcggcgccttcatcggctgcgccaattacccggaatgccgctatacccgtccg
ctggcggtggccggcgaaggcggcgaaggtggtggcgagccattgcccgatggccccaag
gaactagggatcgagcccggctcgggcgagccggttaccctgcgcaaaggcccctatggc
tggtacgtgcaattgggcgagggggccaagcccaagcgggtgtcgctgtacaaggggctg
gaacccggcgccatcgacctggagatcggcctgaagctgctggccctgccgcgcgacgtc
ggcgagcacccggaaacccgtaagatgatcaaggccggcgtcggtcgtttcggcccctat
cttttgcatgacggcgtttacaagtcgttggccaaggatgacgatgtgctgacggtgggt
atgaaccgggcggtggaattgctgtcgcaggccaaaggcaaggccgccgggccgctgaag
accctgggcgagcatgacggcaagccggtgaccgtgcatgagggccgctatggcccctat
gtgtcgcgtgacggcgttcacgccaccctgcccaagggcaccgatccgttgacggtgacg
ctggaacaggccttgccgctgatcgctgccaaggcggccaaggcaccggcgaaaaagccg
gctcgcaaggcggcggcgccgaagaaggctgcggcggaagatggcgaggcgacggtgacg
aagaaggctccggccaagaaggccgccgccaagaagccggcggcgaagaaagcgccggcc
aagaagaaggcggcgggctga
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