Magnetospirillum gryphiswaldense MSR-1: MSR1_25620
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Entry
MSR1_25620 CDS
T05662
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mgry
Magnetospirillum gryphiswaldense MSR-1
Pathway
mgry03420
Nucleotide excision repair
mgry03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mgry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MSR1_25620 (pcrA)
03430 Mismatch repair
MSR1_25620 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgry03400
]
MSR1_25620 (pcrA)
Enzymes [BR:
mgry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSR1_25620 (pcrA)
DNA repair and recombination proteins [BR:
mgry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSR1_25620 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
MSR1_25620 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
AAA_12
SPG48
Motif
Other DBs
NCBI-ProteinID:
AVM75043
LinkDB
All DBs
Position
2722743..2724980
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AA seq
745 aa
AA seq
DB search
MTDPFALDDDIPDPFQPAPRRGGPAPVPADAPWLIGLNPEQHQAVTTTEGPVLVLSGAGT
GKTRVLTSRLAQILAGRRAQPWQILAVTFTNKAAREMKNRVAHMVGPVAEQLWLGTFHSL
CVRILRRHAEAVGLKSNFTILDADDQLRLLKQVMEAEHIDNKKWPAQSLMGAIQRWKDRG
LTPDKIGADLAGDLAGGRAGQLYRLYQERLRTLNAADFGDLLLHCLTLFLSHPDALAHYQ
EQFRYILVDEYQDTNVAQYLWLRLLAQKHKNICCVGDDDQSIYSWRGAEVGNILKFERDF
PGAAVVRLESNYRSTPHILAAASALIANNADRLGKTLRPGLKHEASEIEKVRVRGVWDGP
EEARVVIEEIETLQRRGESAASMAILVRAGFQTREFEERLITTGIPYRVIGGPRFYERQE
IRDALAYLRLINSPDDGLAFERIVNLPKRGLGDAALQAVHAVARARAFPLFEAARLLVET
DELKPKPRGALSKFCDDVLRWRSLLDDLPHPELAEMVLDESGYVEMWKNDKTPEAPGRVE
NLKELVRALSDYENLQSFLEHVALVMENDQRDGVDKVTIMTLHGAKGLEFDNIFLPGWEE
GVFPHQRAMDEGGNAGLEEERRLAYVGLTRARKRVLVTFAANRRIYNQWQSALPSRFLDE
LPAGHVEVQAERGLMGSWSQPAKPKGPGAWAIAPKERTSDFDVGERVFHQKFGGGTVLAV
DGDKLEINFDKAGTKKVLDSFVEPA
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcccttcgcccttgacgacgacatccccgatccgttccagcccgccccccgt
cgcggcggtccggcgcccgtccccgccgatgccccctggctgatcggcctgaaccccgaa
cagcatcaggcggtgaccaccaccgaaggcccggtgctggtgctgtcgggggccggcacc
ggcaagacaagggtgctgaccagccggctggcgcagatcctggccgggcggcgggcgcag
ccgtggcagatcctggcggtgaccttcaccaacaaggcggcgcgtgagatgaagaaccgc
gtcgcccatatggtcggcccggtggctgaacaattatggctgggcaccttccactccctg
tgcgtgcgcatcctgcgccgccatgccgaggcggtggggctgaaatccaacttcaccatc
ctcgatgccgacgaccagttgcggctgttgaagcaggtgatggaagccgagcatatcgac
aacaagaaatggccggcgcaatcgctgatgggggcgatccaacgctggaaggatcgcggc
ctgaccccggacaagatcggcgccgatctggccggcgatctggccggcggccgcgccggg
cagctttatcgcctgtaccaggaacggctgcggaccctgaacgccgccgatttcggcgat
cttctgctgcattgcctgaccttgtttttatcccatcccgacgccctggcccattatcag
gagcagttccgctatatcctggtggacgagtaccaggacaccaacgtggcgcaatatctg
tggctgcggctgttggcacaaaagcacaagaacatctgctgcgtcggcgacgacgaccaa
agcatctattcgtggcgcggggccgaggtcggcaacatcctgaaattcgagcgcgacttc
cccggcgcggcggtggtgcggctggaaagcaattaccgctccaccccccatatcctggcc
gccgccagcgccctgatcgccaacaatgccgaccgcctgggcaagaccctgcgccccggc
ctcaagcacgaggcgagcgagatcgaaaaggtccgggtgcgcggtgtctgggacggcccg
gaagaagcccgcgtggtcatcgaggaaatcgagaccttgcagcgccggggcgaaagcgcc
gccagcatggccattctggtccgtgccggcttccagacccgcgagttcgaggaacgcctg
atcaccaccggcatcccctatcgggtcatcggcggcccgcgcttttatgaacgccaggaa
atccgcgacgccctggcctatctgcggctgatcaactcgcccgatgacgggctggccttc
gagcgcatcgtcaatctgcccaagcgcggcttaggtgacgccgccctgcaagcggtgcac
gcggtcgcgcgcgcgcgcgccttcccgttgttcgaggccgcccgtctgctggtggaaact
gacgaattgaagcccaagccgcgcggcgcgctctccaagttctgcgacgacgtgctgcgc
tggcgcagcctgctggacgatctgccgcaccctgaattggccgagatggtgctggacgaa
tccggctatgtggaaatgtggaagaacgacaaaaccccagaggcgccgggccgggtggaa
aacctgaaggaactggtgcgggcactatccgattacgaaaacctgcaaagcttcctcgaa
cacgtggccctggtcatggaaaacgaccagcgagacggtgtcgacaaggtcaccatcatg
accctgcacggggccaaggggctggaattcgacaacatcttcctgcccggctgggaggaa
ggggtgttcccgcaccagcgcgccatggacgagggcggcaatgcgggattggaagaggaa
cgccgcctcgcctatgtcggtctgacccgagcgcgcaaacgggtgctggtcaccttcgcc
gccaatcgccgcatctacaaccagtggcaaagcgccctgcccagccgcttcctcgacgaa
ctgcccgctggtcacgtggaggtccaggccgaacgcggcctgatgggctcgtggtcgcag
ccggccaagccgaaggggccgggcgcctgggccatcgcccccaaggaacgcaccagcgat
ttcgacgtgggcgagcgggtattccaccagaaattcggcggcggcacggtgctggcggtg
gatggcgacaagctggagatcaatttcgacaaagccggcaccaagaaggtgctggacagt
ttcgtcgagccggcgtga
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