Magnetospirillum gryphiswaldense MSR-1: MSR1_27420
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Entry
MSR1_27420 CDS
T05662
Symbol
dapF
Name
(GenBank) Diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
mgry
Magnetospirillum gryphiswaldense MSR-1
Pathway
mgry00300
Lysine biosynthesis
mgry00470
D-Amino acid metabolism
mgry01100
Metabolic pathways
mgry01110
Biosynthesis of secondary metabolites
mgry01120
Microbial metabolism in diverse environments
mgry01230
Biosynthesis of amino acids
Module
mgry_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
mgry00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
MSR1_27420 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
MSR1_27420 (dapF)
Enzymes [BR:
mgry01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
MSR1_27420 (dapF)
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Paralog
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Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
AVM75212
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All DBs
Position
complement(2918797..2919639)
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AA seq
280 aa
AA seq
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MTDTTDHPFLKMHGLGNDFVVVDVRRSGFVLTPAMARAIADRRTGLGCDQVVVIETARSG
LSDAWMSLWNADGSVTSACGNATRCVAWLLMQQAGSDHAVIETKAGLLDAEMRGDKLVAV
DMGPARLDWREIPLAKPVDTLHMGIGIGSLTDPVGVSMGNPHAVFFVDDVAAIDLAALGP
VLEHHDLFPERANIEVAQVLAPDRIRMRVWERGTGITSACGTGACATLVAAARRGLTARK
ADVVLDGGVLTIEWLPDDHVMMTGPVALVAEGRLHSSLLS
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgactgataccactgaccaccccttcctgaagatgcatggcttgggcaacgatttcgtt
gtcgtcgacgtgcgccgatccggctttgtcctcaccccggccatggcccgcgccatcgcc
gatcgccgcaccggcttgggctgtgatcaggtggtggtgatcgagacagcgcgctccggc
ctgtccgacgcctggatgagtctgtggaacgccgacggctcggtcacctcggcctgcggc
aacgccacccgctgcgtcgcctggctgctgatgcaacaggccggcagcgatcatgcggtc
atcgaaaccaaggctggcctgctggatgccgaaatgcgcggcgacaagctggtcgccgtc
gacatggggccggcgcggctggactggcgggaaatccccctggccaagccggtcgacacc
ttgcatatgggcatcggcatcggttccctgaccgacccggtcggtgtcagcatgggcaat
ccgcacgcggtgttcttcgtcgacgacgtcgccgccatcgatctggccgccctcgggccg
gtgctggaacatcacgatctattccccgaacgggccaatatcgaagtcgcccaggtgctc
gcccctgaccgcatccgcatgcgggtgtgggagcgcggcaccggcatcaccagtgcctgc
ggcaccggcgcctgcgccaccctggtcgccgccgcccgccgcggcctgacggcgcgcaag
gccgacgtggtgctggatggcggcgtgctgaccatcgaatggctgcccgacgaccatgtg
atgatgaccgggccggtggcgctggtggcggaagggcggctgcattccagcttgctgtca
tga
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