Magnetospirillum gryphiswaldense MSR-1 v2: MGMSRv2__1114
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Entry
MGMSRv2__1114 CDS
T02960
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mgy
Magnetospirillum gryphiswaldense MSR-1 v2
Pathway
mgy03030
DNA replication
mgy03430
Mismatch repair
mgy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MGMSRv2__1114 (dnaE)
03430 Mismatch repair
MGMSRv2__1114 (dnaE)
03440 Homologous recombination
MGMSRv2__1114 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mgy03032
]
MGMSRv2__1114 (dnaE)
03400 DNA repair and recombination proteins [BR:
mgy03400
]
MGMSRv2__1114 (dnaE)
Enzymes [BR:
mgy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MGMSRv2__1114 (dnaE)
DNA replication proteins [BR:
mgy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MGMSRv2__1114 (dnaE)
DNA repair and recombination proteins [BR:
mgy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MGMSRv2__1114 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CDK98329
UniProt:
V6EYQ8
LinkDB
All DBs
Position
1158886..1162365
Genome browser
AA seq
1159 aa
AA seq
DB search
MHDAAMPIHADFVHLRTHTAYSLSEGAIKLKQLIKLCEKQMMPAIGIADTGNLFGALEFS
TSCADAGIQPIIGCQVAVRREGEAPARDGRKPDPDWLVLLCQSETGYANLLKLVSKAYLE
TDAGETPQVTLHDLETRSAGLILLTGGPKGPVNRLLADGQNDKAEILLVRLAQGFPGRAY
VELQRHGEENENRAEPGLVNLAYKHDLPLVATNEPFFADRGMYEAHDALICIAEGAYVAQ
DERRRLTPEHYFKSPAEMRELFADLPEACDNTLVVAQRCAFMVAKRKPILPPFRMDGLTE
AEVLRKMCWDGLAQRLEKHVFQPGMTEEEREHVARPYRERIEYEIGVIEQMGFPGYFLIV
SDFIQWSKAHDIPVGPGRGSGAGSAVAWALTITDLDPLRWGLLFERFLNPERVSMPDFDI
DFCQDRREETIRYVQDKYGYHQVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRICKMVP
NNPASPVTLEQALEIEPLLKEARERDEAVAHLLDMGMKLEGLYRHASTHAAGVVIGDRSL
DELVPLYRDPRSDMPVTQFNMKWVEAAGLVKFDFLGLKTLTVMITAIKHIKKTKGLDVDL
SALPLDDQATYELLTRGDAAGVFQLESSGMRDVLRKMRPNRLEDLIAVVALYRPGPMDQI
PRYIACKHGLEQPDYMHPLLEPILKETFGIMVYQEQVMQIAQVLSGYSLGGADLLRRAMG
KKIKEEMEAQRKTFVDGAVARAVDGDQASMIFDKVAKFAEYGFNKSHAAAYALIAYQTAW
LKANHPAEFMAATMTYEMANTDKLNSFRQELDRLKIKLLPPDINKSQATFSVEKLADGSH
AVRYALAALKNVGEGACRSIAEERERSGPYKDLFDFARRLDTKQLNRRQMENMVRAGVFD
SLEKNRGKVFKNCEGLLRYGAGEAEQRQSSQMSLLGGNVAPPPKLENASDWSPHEKLTQE
FDAIGFYLSAHPLDAFSKSLKRLGVLKISELPKHLQAGGKSRVKLAGSMLSKQERTSAKG
SRYAFVTASDSSGMYEVTCFSEVLAASREILEAGGPLLFEVDARLEEEQLRLTCQRIASL
DQEAAKAAAGLKIFIRDDAPIPTLVQLIAKEAKGRNRITIVSQLGTREVEVGLKNTISLS
PGFMGALRSVSGVVDVEEI
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgcatgatgcggccatgccgatccatgccgatttcgtccatctccgcacgcacaccgcc
tattccctgtcggaaggggcgatcaagctcaagcagttgatcaagctgtgcgagaaacag
atgatgccggcaatcggcatcgccgataccggcaatctgttcggggcgctggaattttcc
acctcatgcgccgatgccggcattcagccgatcatcggttgccaggtcgccgtgcgacgt
gagggcgaggcgccggcccgcgacggtcgcaagcccgatcccgattggctggtgctgttg
tgccaaagcgaaaccggctatgccaatctgctgaaactggtatccaaggcctatctggaa
accgatgccggtgaaacgccgcaggtgaccctgcacgacctggaaacccgctcggcaggc
ctgattttgttgaccggcggccctaaggggccggtcaaccggttgctggccgacggccag
aacgacaaggcggaaatcctgctggtgcggctggcccaaggttttcccggtcgggcttat
gtggagttacagcgccacggcgaggaaaacgagaaccgggccgaacccggccttgtcaat
ctggcttacaagcatgacctgccgctggtcgccaccaacgaaccgttctttgccgatcgc
ggcatgtacgaggcccacgacgccctgatctgcatcgccgagggcgcctatgtggcccag
gatgagcgccggcggctgaccccggaacattatttcaagtcgccggcggaaatgcgcgaa
ttgttcgccgacctgcccgaggcctgtgacaacaccctggtggtggcccagcgctgcgcc
ttcatggtggccaagcgcaagccgatcttgccgccatttcgcatggacggcctgaccgag
gccgaggtgctgcgtaagatgtgctgggacggtttggcgcaacggctggaaaagcacgtt
ttccagcccggcatgaccgaagaagagcgcgagcacgtcgcccggccctatcgtgagcgc
atcgaatacgaaatcggtgtcatcgagcagatgggctttcccggctatttcctgatcgtg
tccgacttcatccaatggtccaaggcccacgatatccccgttgggccgggccgtggttcg
ggtgccggttcggcggtggcctgggcgctaaccatcaccgatctcgacccgcttcgttgg
gggctgctgttcgagcgcttcttgaaccccgaacgcgtttccatgcctgacttcgatatc
gacttttgccaggaccggcgtgaagagaccatccgctacgttcaggacaagtacggctat
catcaggttgcccagatcatcaccttcggtaaattgcaagcccgcgccgtgttgcgcgac
gtcggtcgcgtcttgcagatgccttacggtcaggtcgaccgcatctgcaagatggtgccc
aacaacccggccagtccggtgacactggaacaggcgctggagatcgaaccgctgctgaag
gaagcgcgcgagcgcgacgaggcagtggcccatctgctcgacatgggcatgaagctggag
gggctgtaccgccacgcctcgacccacgccgccggcgtggtcatcggcgaccgctcgctc
gacgaattggtgccgctgtaccgagacccacgctcggacatgccggtgacccagttcaac
atgaaatgggtggaagccgccggtctggtcaagttcgactttttgggcctgaagaccctg
acggtgatgatcaccgccatcaaacatataaagaaaaccaagggcttggatgtcgatctt
tccgctttgcctttggacgaccaagccacgtatgaactgctcacccggggcgatgccgcc
ggcgtgttccagttggaaagttcgggcatgcgcgacgtgctgcgcaagatgcggcccaac
cggctggaagatctgatcgccgtggtggcgctgtaccggcccggtccgatggatcagatt
ccgcgctacatcgcctgtaagcacggtctggaacagcccgattacatgcacccgttgctg
gagccgatcctgaaggaaaccttcggcatcatggtctaccaggaacaggtgatgcagatc
gcccaggtactgtcgggctattcgctcggcggcgccgatctgctgcgccgggccatgggt
aagaagatcaaggaagagatggaggcccagcgcaagaccttcgtcgatggcgccgttgcc
cgcgccgtcgatggcgatcaggcgtcgatgatcttcgacaaggtggccaagttcgccgaa
tacggtttcaacaagtcgcacgcggccgcctatgcgttgatcgcctatcagacggcatgg
ctgaaggccaatcatccggccgagttcatggccgccaccatgacctatgaaatggccaac
accgacaagctcaattcgttccgccaggaactggatcgcttgaagatcaagctgctgccg
cccgacatcaacaagtcgcaggccaccttctcggtggagaagctggccgatggcagccat
gccgtacgctatgccttggcggctttgaagaatgtgggcgaaggggcgtgccgctccatc
gccgaggaacgcgagcgcagcggcccgtacaaggatttgttcgatttcgcccgccgcctg
gataccaagcaattgaaccgccggcagatggagaacatggtccgcgccggtgtcttcgat
tccttggaaaaaaatcgcggcaaggtgttcaagaactgcgaaggcctgctgcgctacggt
gccggcgaggccgagcagcgccaatcgtcgcaaatgagtctgctgggtggcaacgtcgcc
ccgccgcccaagctggagaacgcctcggactggtcgccgcacgaaaagctgacccaggaa
ttcgacgccatcggtttttacctgtcggctcatcccctggatgctttcagcaaaagcctt
aaacgcctgggggtgttgaagatatcggaactacccaagcatttgcaggccggcggcaaa
agccgggtcaagctggctggttccatgctgtcgaagcaggaacgcacctcggccaagggc
agccgctatgccttcgtcaccgcctccgactcgtcgggcatgtacgaagtcacctgcttt
tccgaggtgctggcggcatcgcgggaaatcctggaagccggagggcccttgttgttcgaa
gtcgatgcccggttggaagaggagcagttgcgtctgacctgccagcgcatcgcctcgctt
gatcaggaggcggccaaggcggcggcagggctgaaaatcttcatccgcgatgatgccccc
attcccactctggtccaattgatcgccaaggaagccaagggccgcaaccgcatcaccatc
gtctcacaactgggcacgcgcgaagtggaggtggggttgaagaacaccatcagcctcagc
cccggcttcatgggggcgctgcgctcggtatccggcgtggtcgatgtggaagaaatctaa
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