Magnetospirillum gryphiswaldense MSR-1 v2: MGMSRv2__1181
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Entry
MGMSRv2__1181 CDS
T02960
Symbol
Mfd
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mgy
Magnetospirillum gryphiswaldense MSR-1 v2
Pathway
mgy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MGMSRv2__1181 (Mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgy03400
]
MGMSRv2__1181 (Mfd)
Enzymes [BR:
mgy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MGMSRv2__1181 (Mfd)
DNA repair and recombination proteins [BR:
mgy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MGMSRv2__1181 (Mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
SecA_DEAD
RecG_dom3_C
DUF6866_C
Motif
Other DBs
NCBI-ProteinID:
CDK98396
UniProt:
V6F291
LinkDB
All DBs
Position
complement(1224143..1227610)
Genome browser
AA seq
1155 aa
AA seq
DB search
MIKIQNISDAPGRQTLAGTPDGADALTVAELARAWIGRDVLYVARDDGRMARMAEALAFF
APDIEVVDIPAWDCVPYDRVSPHVDLVARRVDGLCKLAQGPGQGARVVLTSVAALVQRVP
PRQVLASSSLSAQVGGRLDIDGIVAYLNRNGYGRTDTVMEPGEYAVRGGILDLFPPGTPE
PVRLDFFGDELESIRSFDPMSQRTSGKLQSFSLVPVSEVTLDDAAIARFRSTYREMFGVV
SGPDPLYEAISQGIKFNGMEHWLPLFHDGMDTLFAYVPDALAVLDHQVEEARDARHALVL
EYYDARRTITGAGLAESGMVYHPLPPNRLYLEKDEWDRLLATRPCVALSPFGPASEKGAD
AGGRPGRDFSDIRARPDGNVYEALREHVGAEKSRRSVLAAWSAGSRDRLSHVLADHGLKP
VLVDSWPEALATPAKSLPMVVLALDHGFVTDDVAVITEQDLLGDRLARPAKKKRKGSQFL
AEASALAEGDLVVHLEHGIGRYDGLVTLQVSGAPHDCLRVIYDGGDKLFVPVENIEVLTR
YGSEQAGAQLDRLGGVAWQSRKAKLKKRIRDMADQLIAIAAQRQLRKSESLTPPEGLWDE
FCARFPYAETEDQARAIEDTVADLGSGRPMDRLVCGDVGFGKTEVAMRAAFVAAMSGMQV
AVVVPTTLLARQHYRNFSDRFHGLPLKVEQLSRLVTAKRANEVKAGLADGSVDIVVGTHA
VLAKSINFKRLGLLIIDEEQHFGVGHKERLKQLKSDVHVLTLTATPIPRTLQLALTGVKE
MSVIATPPVDRLVVRTFVLPFDPVVLREAILRERYRGGQVFYVCPRLADIDRVADRLAKL
VPEVKCAIAHGRLTPTELEEVMTAFGDKQYDVLLSTNIIESGLDMPSVNTLIIHRADMFG
LGQLYQLRGRVGRGKTRGYAYFTLPTDKVLSKPAEKRLHVMQTLDSLGAGFQLASHDLDI
RGAGNLLGEEQSGHIREVGIELYQQLIEEAVAAAKGGEGEMAVEEWSPQITLGTPVLIPD
TYVADLSVRLSLYRRIATLADREEIDQLAAELVDRFGTMPPEVENLLEVVAVKALCKQAG
VEKLDAGPKGAVVTFRGNVFANPIGLVQYIAQQAGAAKLRPDHKLVFVRAWDEPAKRVKL
AQKLIAKLVEIAKAG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
ttgattaaaatacagaatatctctgacgctccgggccgacagactcttgccggcaccccc
gatggcgccgatgccctgacggtggccgaactggcccgggcctggatcgggcgggatgtt
ctgtatgtcgcccgcgatgatggccgcatggcccgcatggccgaggccctggcttttttc
gctcccgatatcgaggtggtggatattcccgcctgggattgcgtgccctatgaccgggtg
tcgccccatgtggatctggtggcgcgccgcgtcgacggtttgtgcaagctggcccaggga
ccgggccagggggcgcgggtggtgctgacctcggtcgccgccctggtacaaagggtgccg
ccgcgtcaggtgctggcctcgtccagcctgtcggcccaggtgggtgggcggctggatatc
gacggcatcgtcgcctatctcaaccgcaacggctatggccgcaccgatacggtgatggag
ccgggcgaatacgcggtgcgcggcggtatccttgacctgttcccgcccggcacgcccgag
ccggtgcgcctggatttcttcggcgacgagttggaaagcatccgcagcttcgaccccatg
agccagcgcaccagcggcaaactgcaaagcttttccctggttccggtcagcgaggtgacg
ctggacgatgccgccatcgcccgcttccgcagcacctaccgcgagatgttcggcgtggtc
agcggccccgacccgctgtacgaggccatttcccagggcatcaagttcaacggcatggaa
cattggctgccgttgttccatgacggcatggataccctgttcgcctatgtccccgacgcc
ctggcggtgctggaccatcaggtggaagaggcgcgcgacgcccgccatgccctggtgctg
gaatattacgacgcaaggcgcaccatcaccggcgccggcttggccgaatcgggcatggtc
tatcacccgttgccgcccaaccggctgtacctggaaaaggacgaatgggaccgcctgctg
gccacccgcccgtgcgtggctctgtcgccgttcggcccggccagcgaaaaaggcgccgat
gccggcggcaggcctgggcgcgatttctccgacatccgggcgcggcccgacggcaatgtc
tatgaggcgctgcgcgagcatgtgggggcggaaaaaagccgccgttcggtcctggccgcc
tggagcgccggatcgcgcgatcgcctgtcgcatgtgctggccgatcacggcctgaagccg
gttctggtcgatagctggcccgaggcgctggccaccccggccaaatccctgcccatggtg
gtgctggccctggatcacggtttcgtcaccgacgacgtggcggtgatcaccgaacaggat
ctgctgggcgaccgtctggcccgtccggccaagaaaaagcgcaagggctcgcaattcctg
gccgaggcctcggccctggccgaaggcgatctggtcgtccatctggaacacggcatcggt
cgttatgacggtctggtgacgttgcaagtgtcgggcgcgccgcatgattgcttgcgggtg
atctatgacggcggcgacaagctgttcgtgccggtggaaaatatcgaggttctcacccgt
tacggctcggaacaggccggcgcccagctcgaccgcctgggcggggtggcgtggcagtcg
cgcaaagccaagctgaaaaagcgcatccgcgacatggccgaccagttgatcgccatcgcc
gcccagcgccagttgcgcaaatcggaatccctgaccccgccggaagggctgtgggacgaa
ttctgcgcccgcttcccctatgccgagaccgaggatcaggcccgcgccatcgaggatacg
gtggccgacctgggatcgggccggcccatggatcgtctggtctgtggcgatgtgggtttc
ggcaagaccgaagtggccatgcgcgccgccttcgtcgccgccatgagcggcatgcaggtg
gcggtggtggtgccgaccacgctgttggcgcgccagcattaccgcaatttctccgaccgg
ttccacggcttgccgctgaaggtcgagcaattgtcgcggctggtgacggccaagcgggcg
aacgaggtcaaggccgggctggccgacggctcggtcgacatcgtcgtcggcacccatgcg
gtgctggccaaatccatcaatttcaagcgcctgggcctgttgatcatcgacgaggaacag
catttcggcgtcggccacaaggagcggctgaaacagctgaaatccgacgtccacgtgctg
accctgaccgccaccccgattccgcgcacgctgcaactggcgctgaccggggtcaaggag
atgagcgtcatcgccaccccgccggtggaccgtctggtggtgcgcaccttcgtgctgccc
ttcgatccggtggtattgcgcgaagccatcctgcgcgaacgctatcggggcggtcaggtg
ttttacgtctgcccgcgtctggccgatatcgaccgcgtcgccgaccggctggccaagctg
gtgcccgaggtcaaatgcgccatcgcccatggccggttgacgccgaccgagctggaagag
gtgatgaccgccttcggcgacaagcaatacgacgtgctgttgtccaccaacatcatcgaa
tccggcctggacatgccatcggtcaacaccttgatcatccaccgtgccgacatgttcggc
ctgggccagctttatcagttgcgcggtcgcgtcgggcgcggcaagacccgtggctatgcc
tatttcaccctgcccaccgacaaggttttgtcgaagccggcggaaaagcgcctgcatgtg
atgcagacgctggacagcttaggcgccggtttccaattggccagccatgacctggatatc
cggggcgccggcaatctgctgggcgaggaacaatcgggccatatccgcgaagtcggcatc
gagctttaccagcaactgatcgaggaagcggtggccgccgccaagggcggcgagggcgag
atggcggtggaagaatggtcgccgcagatcaccttgggcacgccggtgctgatccccgat
acctatgtggccgacctgtcggtgcgtttgtcgctttatcgccgcatcgccaccttggcc
gaccgcgaggaaatcgatcaattggcggccgagctggtcgaccgcttcggcaccatgccg
cccgaggtggaaaacctgctggaagtggtggcggtcaaggccttgtgcaaacaggccggg
gtggaaaagctggatgccggtcccaagggggcggtggtcaccttccgtggcaatgtcttc
gccaatcccatcggtctggtgcaatacatcgcccagcaggccggtgccgccaagctgcgc
cccgaccacaaactggtcttcgtccgcgcctgggacgagccggccaagcgggtcaagctg
gcgcagaagctgatcgccaagctggtggaaatcgccaaggcggggtga
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