Magnetospirillum gryphiswaldense MSR-1 v2: MGMSRv2__2180
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Entry
MGMSRv2__2180 CDS
T02960
Name
(GenBank) Putative ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene)
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mgy
Magnetospirillum gryphiswaldense MSR-1 v2
Pathway
mgy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MGMSRv2__2180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgy03019
]
MGMSRv2__2180
Enzymes [BR:
mgy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MGMSRv2__2180
Messenger RNA biogenesis [BR:
mgy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MGMSRv2__2180
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
NACHT
GcpE
ERCC3_RAD25_C
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
CDK99395
UniProt:
V6F1J5
LinkDB
All DBs
Position
2305520..2306860
Genome browser
AA seq
446 aa
AA seq
DB search
MTSFKDLGLAEELTFALDAEGYTTPTPIQEQAIPHLLAGHDMLGIAQTGTGKTAAFALPI
LHRIASDKRRAAPRTVRNLILTPTRELAVQINDGFATYGRNIRFRRACVFGGVGQGPQVR
ALNGGVDVLVATPGRLLDLMDQGFVNLSGIQTLVLDEADRMLDMGFIQPVRKIAALLPTG
RQTLLFSATMPKAVADLASFLLRDPVRVEVTPVSSTAERIEQKVLFVTRENKRNLLLDLL
RGKGVGRAIVFTRTKHGANRVAEQLMKDGVTADAIHGNKSQNARQRALDAFRSGEVQALV
ATDIAARGIDIDNVTHVINFELPNEPESYVHRIGRTARAGAEGIAVSFCDAEEVAYLRQI
EKIIQQPVPVDIEHEYHAEPVARLFASGKGNPPKRGGGGARPFVGGNRPKGPSAGRPGGG
GAPGGGNGGQRRHAAGPGGHGHSKRG
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgacttcgttcaaagacctcggcctggccgaagaattgacctttgccctcgacgccgag
ggttacaccacgccgaccccgattcaggaacaggccatcccgcatctgctggccggccac
gacatgctgggcatcgcccagaccggcaccggcaagaccgccgccttcgccctgcccatc
ctgcaccgcatcgccagcgacaagcgtcgcgctgcgccccggaccgtgcgcaacctgatt
ttgacgccgacccgcgaactggccgtgcagatcaatgacggtttcgccacctatggccgc
aacatccgtttccgccgcgcctgcgtgttcggcggtgtcggccagggcccgcaggtccgc
gccctcaatggcggcgtcgacgtgctggtcgccactcccggtcgcctgctcgacctgatg
gaccaaggcttcgtcaacctgtcgggcatccagaccctggtcttggacgaagccgaccgc
atgctcgacatgggcttcatccagccggtgcgcaagatcgccgccctgctgcccaccggt
cgtcagaccctgctgttctcggccaccatgcccaaggcggtggctgatctggccagcttc
ctgctgcgcgacccggtgcgcgtcgaggtcaccccggtgtcgtcgacggctgaacgtatc
gaacagaaggtgctgttcgtcacccgcgagaacaagcgcaacctgctgttggacctgctg
cgcggcaagggcgtggggcgtgccatcgtcttcacccgcaccaagcacggcgccaaccgc
gtcgccgagcagctgatgaaggacggggtcaccgccgacgccatccacggcaacaagagc
cagaatgcccgccagcgggcgctggacgccttccgctcgggtgaagtgcaggctctggtc
gccaccgacatcgccgcccgcggcatcgacatcgacaacgtcacccacgtcatcaatttc
gagctgccgaacgagccggaaagctatgtccaccgtatcggccgcaccgcgcgcgccggt
gccgaaggcatcgccgtgtcgttctgcgacgccgaggaagtggcttacttacgccagatc
gaaaagatcatccagcagccggtgccggtggatatcgaacacgaataccatgccgagccg
gtggcccgtctgttcgccagcggcaagggcaacccgcccaagcgtggcggcggcggtgcc
cgtccgttcgtcggcggcaaccgccccaagggcccgtccgcgggtcgtccgggtggcggt
ggcgcccccggcggcggcaacggcggccagcgccgtcatgctgccggccccggcggccac
ggccacagcaagcgtggctaa
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