Magnetospirillum gryphiswaldense MSR-1 v2: MGMSRv2__3112
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Entry
MGMSRv2__3112 CDS
T02960
Symbol
polA
Name
(GenBank) fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
mgy
Magnetospirillum gryphiswaldense MSR-1 v2
Pathway
mgy03030
DNA replication
mgy03410
Base excision repair
mgy03420
Nucleotide excision repair
mgy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MGMSRv2__3112 (polA)
03410 Base excision repair
MGMSRv2__3112 (polA)
03420 Nucleotide excision repair
MGMSRv2__3112 (polA)
03440 Homologous recombination
MGMSRv2__3112 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mgy03032
]
MGMSRv2__3112 (polA)
03400 DNA repair and recombination proteins [BR:
mgy03400
]
MGMSRv2__3112 (polA)
Enzymes [BR:
mgy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MGMSRv2__3112 (polA)
DNA replication proteins [BR:
mgy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MGMSRv2__3112 (polA)
DNA repair and recombination proteins [BR:
mgy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
MGMSRv2__3112 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MGMSRv2__3112 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
CDL00327
UniProt:
V6F4M9
LinkDB
All DBs
Position
3197102..3199879
Genome browser
AA seq
925 aa
AA seq
DB search
MTAVAGDPQHVFLVDGSGFIFRAFHGLPAMSRPDGTPVNAVYGFTTMLLKLLSDTDADHV
AVIFDAGRLSFRNDIYPEYKAHRPPAPEDLVPQFPLIRDVVAAFNVPSVEMEGFEADDLI
ATYATQAVARGARVTIVSSDKDLMQLVGERVEMLDTLKNRTIRAPEVLEKFGVAPDKVVD
VQALCGDPTDNVPGVPGIGVKTAAQLIGEYGDLDSLLARASEIKQPKRRETLLNNAELAR
ISRELVRLKCDVPVTESLDSFAKRPFDRQVLADFLAAQGFKSIVARLGGSSVTPTAAPAV
TAPVAVAAPVVAQYELVTSVEVLEAWVAEATRMGTVAFDTETTGLDPLRAELVGVSLATA
PGRACYIPIKHDAGPAQGSLLLDPSPAAAGPDILGREVTLAKLAPLLADASVLKIGHNIK
YDMQVMAQAGLTVTAFDDTMLLSYVLDGASHGHGMDELAKLHLDHDTIKFADVCGTGKNQ
ITFDRVPLDKALAYAAEDADITLRLHGVLKARLLAERMVTVYETLERPLVPVIVAMEAAG
IKVDRTALMALSAEFGGRMAELEVQIQTLAGREFNVGSPQQLGKVLFEDMSLPGGKKTKT
GQWGTGADALEELAAQGHDLPARVLDWRQLSKLKGTYTDALVAQINGRTGRVHTSFALAL
TTTGRLSSSDPNLQNIPIRSEEGRKIRHAFIAEPGHVLLSADYSQIELRLVAHVAGIKGL
IQAFHDGADIHAITAAQVFGVPVEGMDPMLRRRAKAINFGIIYGISAFGLAQQLGISNGE
AKSYIDAYFGRYPEIRDFMERTKEEARANGFVLTPFGRKVFTPGIKDKNGAMRAFAERAA
INGPIQGGAADIIKRAMIRLPAALAAEGLKARLLLQVHDELVLEVPVAEQDATRAVVCRV
MESAAQLDVPLVAEAGFGTSWGDAH
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgccgtggctggcgacccgcaacacgtctttttggtggatggctcgggcttcatc
ttccgcgccttccacggtctgccggccatgtcgcggcccgacggcaccccggtgaatgcc
gtttacggcttcaccaccatgctgctgaagctgctctccgacaccgacgccgatcacgtg
gcggtgatcttcgatgccgggcggctgtcgttcaggaacgacatctaccctgaatacaag
gcccaccgcccgccggcacccgaggatctggtgccgcaattcccgctgatccgcgacgtg
gtcgccgccttcaacgtgccttcggtcgagatggagggcttcgaggccgacgacctgatc
gccacctatgccacccaggcggtggcccgaggggcgcgggtcaccatcgtgtcgtcggac
aaggatctgatgcagttggtgggcgagcgggtcgagatgctcgacaccctgaaaaaccgc
accatccgcgcccccgaggtgctggagaaattcggtgtcgcccccgacaaggtggtcgat
gtccaggccctgtgcggcgacccgaccgacaacgtgccgggcgtgcccggcatcggcgtc
aagaccgccgcccagttgatcggcgaatacggcgatctggacagcttgctggcgcgtgcc
agcgagatcaagcagcccaagcggcgcgaaaccctgctgaataatgccgaactcgcccgc
atcagccgcgaattggtgcgcctgaagtgcgacgtgccggtgacggaatccctggacagt
ttcgccaagcgtccgttcgatcgtcaggtgctggccgatttcctggcggcgcagggcttc
aaaagtatcgttgcccgcctgggcggatcgtcggtcacccccaccgccgcgcccgctgtc
accgccccggttgcggtcgccgccccggtggtcgcccaatatgaactggtgaccagcgtc
gaagtgctggaggcctgggtggcagaggccacccgcatgggcaccgtcgccttcgacacc
gaaaccaccggccttgacccgcttcgggccgaactggtcggggtgtcgctggcgaccgcc
cccggtcgcgcctgctatatccccatcaagcacgatgccggcccggcgcaaggctcgctg
ctgcttgaccccagccccgccgccgccggcccggacatcctgggccgtgaggtgacgctg
gccaaactggcgccgttgctggccgatgcttcggtgctgaagatcggccacaacatcaag
tacgacatgcaggtgatggcccaggccgggctgaccgttaccgccttcgacgacaccatg
ctgctgtcctatgtgctggacggcgccagccatggccacggcatggacgaattggccaag
ctgcatctcgaccacgacaccatcaaattcgccgatgtttgcggcaccggcaagaaccag
atcactttcgaccgggtgccgctggacaaggccctggcctatgccgccgaggatgccgac
atcaccctgcgcctgcacggggtgctgaaggcgcggctgctggcggaacgcatggtcacg
gtatacgagaccctggaacgcccgctggtaccggtgatcgtcgccatggaagccgccggc
atcaaggtggatcggaccgcgctgatggcgctgtcggcggaattcggcggacgcatggcc
gagctcgaggtgcagatccagactttggccgggcgtgaattcaacgtcggctcgccccaa
caattgggcaaggttctgttcgaggacatgtcgctgcccggcggcaagaagaccaagacc
ggccaatggggcaccggtgccgatgccctggaagagctggccgcccagggccacgatttg
cccgcccgcgtgctcgattggcggcaattgtccaaactgaagggcacctataccgacgcc
ctggtcgcccagatcaatgggcggaccggtcgtgtccacaccagtttcgccctggcgctg
accaccaccgggcggctgtcgtcgtcggaccccaatttgcaaaacatccccatccgcagc
gaggaaggccgcaagatccgccacgccttcatcgccgagcccggccatgtgctgttgtcg
gcggattattcgcagatcgagttgcggctggtcgcccatgtggccggcatcaaggggctg
atccaggccttccacgacggcgccgacatccacgccatcaccgccgcgcaagtgttcggc
gtaccggtcgagggcatggacccgatgctgcggcgtcgggccaaggccatcaatttcggc
atcatctacggcatctccgccttcggtctggcccagcagcttggcatcagcaacggcgag
gccaagtcctatatcgacgcctatttcggtcggtacccggaaatccgcgatttcatggaa
cgcaccaaggaagaggcgcgcgccaacggttttgtcctcacgcccttcgggcgcaaggtg
ttcacccccggcatcaaggataaaaacggggccatgcgcgctttcgccgaacgcgccgcc
atcaatggcccgatccagggcggtgccgccgatatcatcaagcgtgccatgatccgcctg
cccgccgccctggccgccgagggactgaaagcgcgcctgttgttgcaggtgcatgacgaa
ttggtgcttgaggtgccggtggctgaacaggatgccacccgcgcggtagtctgtcgggta
atggaaagtgccgcccaattggatgtgcctttggtcgccgaagccggatttggcaccagt
tggggcgatgcgcactga
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