Magnetospirillum gryphiswaldense MSR-1 v2: MGMSRv2__4034
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Entry
MGMSRv2__4034 CDS
T02960
Name
(GenBank) putative ssDNA exonuclease, 5'--> 3'-specific
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mgy
Magnetospirillum gryphiswaldense MSR-1 v2
Pathway
mgy03410
Base excision repair
mgy03430
Mismatch repair
mgy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MGMSRv2__4034
03430 Mismatch repair
MGMSRv2__4034
03440 Homologous recombination
MGMSRv2__4034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgy03400
]
MGMSRv2__4034
DNA repair and recombination proteins [BR:
mgy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MGMSRv2__4034
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MGMSRv2__4034
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MGMSRv2__4034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
CDL01249
UniProt:
V6F712
LinkDB
All DBs
Position
complement(4125909..4127684)
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AA seq
591 aa
AA seq
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MHADAAFLGVERSLTGRRWQSSGGDERLAATLSQRLALPEIIGRVLAARGIGLDEAETFL
SPTLRALLPDPSHLKDMDKAAARIASAVMTGEPIGIFGDYDVDGATSSALLNTFLTAIGA
TALVHIPDRMSEGYGPNLPALLKLAAQGAKVVVTVDCGTTAFDPLEGAAEAGIDVIVVDH
HEAEPHLPRAFAIINPKRLDDDSPHGHLAAVGVTFLVVVAVNRVLKEAGWYGPARPAPDL
LQWLDVVALGTVCDVVPLWGVNRALVTQGLKVMAKRANVGLAALSDVAGIKERPDSYHLG
YVLGPRVNAGGRVGQSALGSRLLSTHDPLLAADIARQLDGYNKERQEIEAAVLLEAIEQV
EGRDDDGLPLVVAAGENWHPGVIGIVAGRLKERYGRPACVIALDGDEGKGSGRSVTGLDL
GCAIIAARQQGLLKAGGGHAMAAGFTVMRDRLGDFRAFLADRLQAQLTGELVPVLDLDGA
IDAAGATVDLVETLKQLGPFGAGNPEPRFAVTGARVVKADVVGSGHIRIIAQSAGGQRLK
AIAFRAADSEMGLTLLGGQGRTFHLAGTLRVDSWQGNNSVQLIIDDAAAAR
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgcatgccgacgctgccttcctgggggtcgagcgttcgctgaccgggcggcgctggcaa
tccagcggcggcgacgaacgcttggccgccaccttgtcgcaacgcctggccctgccggaa
atcatcggccgggtgctggcggcacgcggcatcggcctggacgaggcggaaaccttcctc
tcccccaccctgcgtgccctgctgcccgatcccagccacctgaaggacatggacaaggcc
gccgcccgtatcgccagcgcggtgatgacgggggaacccatcggcatcttcggtgattac
gacgtcgacggcgccacctcgtcggcgctgctcaacacctttctgaccgccatcggcgcc
accgccctggtgcatatccccgaccgcatgagcgaaggctatggccccaacctgccggca
ttgctgaaactggcggcgcaaggggccaaagtggtggtgacggtggattgcggcaccacc
gccttcgacccgctggagggcgccgccgaggccggcatcgacgtcatcgtcgtcgaccat
catgaagccgaaccacacctgccccgggccttcgccatcatcaaccccaaacgcctggac
gacgacagtccgcacggccatctggccgccgtcggcgtcaccttcctggtggtggtggcg
gtcaaccgggtactgaaggaagcgggctggtacggtcctgcccgtcccgcccctgacctg
ctgcaatggctggacgtggtcgccctgggcacggtgtgcgacgtggtgccgctgtggggc
gtcaaccgcgccctggtcacccaggggctgaaggtgatggccaagcgcgccaatgtgggg
ctggcagcattgtccgacgtggccggcatcaaggaacgtccggattcctatcacctgggt
tatgtgctggggcctcgcgtcaatgccggtgggcgggtcggccagtcggcgctgggctcg
cgcctgttgtccacccacgacccgcttctggccgccgacatcgcccgccaattggacggc
tacaacaaggaacgccaggaaatcgaagccgccgtgctgctggaagccatcgaacaggtg
gaagggcgcgacgacgacggcctgcccctggtggtggcggcgggcgagaattggcacccc
ggcgtcatcggcatcgtcgccggtcggctgaaggaacgctatggccgaccagcctgcgtc
atcgccttggacggcgacgagggcaagggctcgggccgctcggtcaccggccttgacctg
ggctgcgccatcatcgccgcccgccagcagggcctgttgaaggctggcggcggtcatgcc
atggccgccggctttacggtgatgcgcgaccgcttgggcgacttccgcgctttcctggcc
gatcgcctgcaagcccagttgacgggcgagctggtgccggtgctggacctggacggtgcc
atcgacgcggcgggggccacggtggatttggtggaaaccctgaaacagcttggccccttc
ggcgccggcaacccggaaccccgcttcgccgtcaccggcgcccgcgtggtcaaggccgac
gtggtcggcagcggccatatccgcatcatcgcgcaaagcgccggcggccaacggctgaag
gccatcgccttccgcgccgccgacagcgaaatgggcctgaccctgctgggcggccagggt
cgcaccttccacctggccggcacgttgcgggtggatagctggcagggcaacaactcggtg
cagttgatcatcgatgacgccgccgccgctcgatga
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