Magnetospirillum gryphiswaldense MSR-1 v2: MGMSRv2__4134
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Entry
MGMSRv2__4134 CDS
T02960
Name
(GenBank) putative 3'-5' exonuclease family protein
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mgy
Magnetospirillum gryphiswaldense MSR-1 v2
Brite
KEGG Orthology (KO) [BR:
mgy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mgy03016
]
MGMSRv2__4134
Enzymes [BR:
mgy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
MGMSRv2__4134
Transfer RNA biogenesis [BR:
mgy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MGMSRv2__4134
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
CDL01349
UniProt:
V6F7C3
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All DBs
Position
4231671..4232282
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AA seq
203 aa
AA seq
DB search
MSIQYHVGDLPAHVDLGPVVAIDSETMGLSLVRDRLCVIQLSAGDGNAHVVHFPDGTYDA
PNLKRLLADPGVVKLFHFARFDLAMIAKYLGIRCEPVWCTKVASKLVRTNTDRHGLKDLC
RELLGVDLSKQQQTSDWGAPVLNDDQLAYAASDVLYLHQLKARLEHLLDREGRRALVEAC
FRFLPDRAALDLAGWDEQDVFTH
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atgtctatccagtatcatgtcggtgatttgccggctcatgtggatttggggccggtcgtc
gccatcgacagcgaaaccatgggccttagcctggtgcgcgatcggctgtgcgtgatccag
ctttcggcgggtgacggcaatgcccacgtggtgcactttcccgacggtacttacgacgct
cccaatctcaagcgcctgctggccgaccctggggtggtcaagctgttccacttcgcccgc
ttcgacctggccatgatcgccaagtatctgggcatccgctgcgaaccggtctggtgcacc
aaggtggcgtccaagctggtgcgcaccaacaccgaccgccatggcctgaaggatctgtgc
cgcgaattgctgggcgtggatttgtccaagcagcagcagacctcggattggggggcgccg
gtgctcaatgacgaccagttggcctatgccgcttcggatgtgttgtacctgcatcagttg
aaggcccggctcgagcatctgctcgaccgcgaaggtcgccgcgccctggtagaggcttgt
ttccgcttcctgcccgaccgcgccgccctggacttggccggctgggacgagcaggacgtt
ttcacgcattaa
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