Marivirga harenae: Q3Y49_10785
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Entry
Q3Y49_10785 CDS
T09240
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mhaa
Marivirga harenae
Pathway
mhaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q3Y49_10785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhaa03019
]
Q3Y49_10785
Enzymes [BR:
mhaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q3Y49_10785
Messenger RNA biogenesis [BR:
mhaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q3Y49_10785
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
P-loop_SecA
AAA_22
G-alpha
Motif
Other DBs
NCBI-ProteinID:
WKV10698
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All DBs
Position
2502246..2503388
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AA seq
380 aa
AA seq
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MSFASFDLPISLSNSLVKQNIKTPFPIQKEVIPIALKGQDVLGIAKTGSGKTLAYILPIL
TKLNLFPEGRNRQPQVLILVPTRELAQQVLEVFKLFVDVNRNNSKTLAVFGGTSINPQMQ
AMGEVKILIATPGRLLDLVSSNALKLSALELLVVDEADKLLSTNFKVELDKILKLIPGTA
QKLLFSATLSPDVQKLNQLYLNKPAIVHLQQREEKIQLIDQSAYAVDDYQKGPFLRYLVK
SKDLTQVMVFTSSINTADKVADKLRKNGVVAVAVHSKKSQRARNQSLQDFKGGKINVLVT
TDLLSRGIDIEFLPFVINYELPRSPKDFVHRVGRTGRAEHSGIAISLISPEEQSHFEVIQ
KKMKNKIELKDISDIDLHGY
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcatcctttgatttgcctatttctctttctaattctttagtaaaacagaac
attaaaactccatttcctattcagaaggaagttattccaatagcattaaaggggcaagat
gttttaggtattgctaaaacaggatctggaaaaaccttagcctatattttacccattctt
accaagcttaacctttttccggaagggagaaatcgtcagcctcaagttttaatcttggta
cctactcgtgaattggcacaacaagttttagaggtttttaaactttttgttgatgtaaat
agaaacaatagtaaaactttggctgtatttggtggcacttctatcaatccgcaaatgcag
gcgatgggagaggttaaaatattaattgctacgccaggtaggttactggatttggtgtct
tctaatgctctaaaattaagcgctttagaacttttggtggtggacgaagcagataaacta
ttgagcactaattttaaagttgagcttgataagattttgaaactcattcccggtacagct
caaaaattattattttcagctactttaagccctgatgttcagaaacttaatcaactatat
ctcaataaacctgctattgtacatctacagcagagggaagaaaaaattcagttgattgac
cagtcagcctatgcagttgacgactatcaaaaaggaccatttcttcggtatttagtaaag
tcgaaagatctgacacaggtaatggtgttcacttcttctataaatacagcagacaaagtt
gccgataaattgagaaaaaacggagttgttgctgtggcagttcatagcaagaaaagccag
cgtgcacgtaatcaatctttgcaagattttaagggaggaaaaatcaatgtattggtaact
actgaccttttatctaggggtatcgatattgaatttttaccttttgtaattaactatgaa
ttacctcgatcacctaaggattttgttcacagagtaggaaggactggtagggcagagcat
tcaggaatagctatttcacttatttcacctgaagaacagtctcactttgaggtaatacaa
aagaaaatgaagaacaaaattgagttaaaagacatatccgatattgatttgcacggttat
taa
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