Marivirga harenae: Q3Y49_12625
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Entry
Q3Y49_12625 CDS
T09240
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mhaa
Marivirga harenae
Pathway
mhaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q3Y49_12625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhaa03019
]
Q3Y49_12625
03009 Ribosome biogenesis [BR:
mhaa03009
]
Q3Y49_12625
Enzymes [BR:
mhaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q3Y49_12625
Messenger RNA biogenesis [BR:
mhaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q3Y49_12625
Ribosome biogenesis [BR:
mhaa03009
]
Prokaryotic type
rRNA helicases
Q3Y49_12625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RecG_N
P53_tetramer
SBF_like
Motif
Other DBs
NCBI-ProteinID:
WKV11058
LinkDB
All DBs
Position
complement(2935207..2937030)
Genome browser
AA seq
607 aa
AA seq
DB search
MSQHIPDIVLNFLQQRMLTFEELGLKPEILKAILEIGFVEPTAIQQKTIPHLLNTKQDLI
ALAQTGSGKTAAFGLPVINQIDGDSKKTQSLVLCPTRELAIQIANDFNAYTKYTKKLDVL
PVYGGSSIETQIKALNKGAQIVVGTPGRVVDLIKRKKLKLEDIEWVVLDEADEMLNMGFK
DDLDFILSHTPDQRQTLLFSATMSKEVLRISNNYMNSPEEISSGKRNQGADKVEHFYFVV
NGRDKYLALKRIADINPNIYGIIFCRTKRETQEISDQLMADGYNADCLHGDLSQAQRDAV
MGRYRKKNLQMLVATDVAARGLDVNEITHVINYNIPDDLETYTHRSGRTGRAGKAGISMA
IIGPRDINKIKQLEKILGKTFTKSEVPAGNAVIEKQLMAFIEKVKASEVDEKQMEPFIES
ISAEFEDLSREDLIKKFVSLEFNKFLDYYKNSADLNQKAKAGRDSDRGERGGSRGDSRRK
DGNFNKLFLNIGEKDNLNAGTLLGWINGLQSVPNGIEFGKIDVQRSFTFMEVESQHEQTI
LEALNKSDFDGRKVVAEPKTGGGPRKSSRPEGKRNSGGGSGFKKRSGDRKPGGRARVKAG
SGGGRRR
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaacatatccctgatattgtattaaattttttacaacaacgcatgttaacattc
gaagaattaggccttaagcctgaaatccttaaagctattttagaaataggctttgtggaa
ccaactgccattcagcagaaaactattccacatttattaaatactaagcaagatcttatt
gccttagctcaaacaggttctgggaaaactgctgcctttggattacctgtcatcaatcaa
attgatggtgattctaaaaagacacaatcattggtattatgtccaactcgtgagttggcc
attcaaattgctaatgactttaacgcatataccaaatacaccaaaaaactagatgtatta
ccggtttatggtggttcaagcattgaaactcaaataaaagccttaaacaaaggtgcacag
atcgtagtgggtacacctggacgagttgtggatttgatcaaaagaaagaaattaaaatta
gaagacattgaatgggtagttttagatgaagccgatgaaatgttgaatatgggttttaaa
gatgatttagatttcattttatctcatacgcctgaccaaagacaaaccctattattctct
gcgactatgtcgaaagaggttttaaggatttccaacaactacatgaacagtcctgaagaa
atttcatcaggaaaaagaaatcaaggtgctgataaagtagaacacttttactttgtcgta
aatggaagggacaagtatttagctttaaagagaattgcggatattaaccctaatatttac
ggaattattttctgtagaaccaaaagagaaacacaagaaatttctgaccaattaatggcg
gatggctataatgctgactgtttgcatggtgatttatcacaagcgcaaagagatgcagta
atggggcgttacaggaaaaagaatttacaaatgttggttgccactgatgtagctgccaga
ggtttggatgtaaatgaaatcacgcacgtcatcaattataatatccctgatgatttggaa
acttatacgcaccgaagtggtcgtacaggcagagctggaaaagcgggtatttcaatggcc
attattggcccaagagacatcaataaaatcaagcaattagaaaagattttaggtaaaact
ttcaccaaatctgaagttcctgctggtaatgcagtaattgaaaagcagttgatggctttt
attgaaaaagtaaaagcttctgaggtagacgaaaaacaaatggagccttttatcgaaagt
attagtgcggaatttgaagatctaagccgcgaagacttaatcaagaaattcgtttcttta
gaattcaataagtttttagattactacaagaattctgcagacttaaatcaaaaggccaaa
gcaggaagagattctgatagaggcgaacgaggcggcagcagaggagatagcagacgaaaa
gacggtaatttcaataaattattcttgaacataggtgaaaaggataatttgaatgctggt
actttattgggctggatcaacggtttacagagcgttccaaacggaattgaatttggtaaa
attgatgttcaaagaagttttactttcatggaagtagaaagccagcatgagcaaactatt
ttagaggctttgaacaaaagtgattttgatggacgaaaagtggtggcagaaccgaaaaca
ggtggtggaccaagaaaatcaagcagacctgaaggtaaaagaaatagtggaggcggaagt
ggattcaagaaaagaagtggcgatagaaaaccaggtggaagagctagagtgaaagctggt
tctggtggtggaagaagaagatag
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