Marivirga harenae: Q3Y49_15440
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Entry
Q3Y49_15440 CDS
T09240
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
mhaa
Marivirga harenae
Brite
KEGG Orthology (KO) [BR:
mhaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhaa03019
]
Q3Y49_15440 (hrpB)
Enzymes [BR:
mhaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Q3Y49_15440 (hrpB)
Messenger RNA biogenesis [BR:
mhaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Q3Y49_15440 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HA2_N
AAA_19
HA2_C
DUF3638
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
WKV11596
LinkDB
All DBs
Position
3630214..3632334
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AA seq
706 aa
AA seq
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MPKFDFSKIDLPIIKILPTLLQRMKEEQNLILNAEAGAGKSTIIPLALLDMLKVDQKIIM
LEPRRLAAKSIAQRMSQLLGEEIGTTVGYRIRFETRVTKSTKIEVVTEGILNKMMDSDPH
LTDVAIIIFDEFHERSIHADVALALARFTQQNSRPDIKLLIMSATLNQKLLAKELKAKVV
VSEGRQYPVDIVYAGNLDQRLIAELTAEQIKRSLIEDEGDILVFLPGQGEILGIQDLLRK
AKIKAEICPLYGQLPWPKQWSAIQPHPKGKRKVVLATSIAETSLTIEGIKIVIDTGLKRN
SIFDPNSALNSLITQNISQDEATQRAGRAGRVAAGKCYRMWTQTEQNLKPSHRLAEILYA
DLANLKLDLAARNIHESKKLFWLTPPPLDKLIYAENLLNQLEAIDAEKHITEVGKQMHQL
PCHPRLAHMLVKSTENLSLAVDIAALLEEKDPLYKKAGADISERIETLRTLRNEKRLGRN
FKKIEKIASSYRSLFNIDEDNSEIDPYAIGYLLAMAYPDRIASAKRGNNAQFQLSNGSIA
AIGHKDELADESWLTVANMDARSGMGKIFLAAPLNPRDLKPLVKNKRSVKWNFDDDEFVV
SEDLSIGNIILKSEELDQESSPFEKRNAIIRALQLHYEELLRPDDEFANYLQELKIKSDE
LLDLDLKFLGITAERWLPVGIENDQQVLKKIQQLSLTSILRNLITS
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaatttgacttttctaaaatagatttaccgataatcaaaattcttccaacacta
ctgcaaagaatgaaagaggagcaaaacctcatattaaatgcagaagctggtgctggaaaa
agcaccatcatcccattagcgttactggatatgctgaaagtggatcaaaaaattatcatg
ctggagccaagaagattagcagcaaaatccatagcacaaaggatgtcccagcttttagga
gaagaaataggcaccaccgttggttacagaatccgctttgagaccagagtgaccaaatct
accaaaatagaggttgtaactgaaggtatcctcaacaaaatgatggacagtgaccctcat
ctcacagatgtagccataatcatttttgatgaatttcatgaaagaagtatacatgcagat
gttgctttagctttagcccgcttcactcaacaaaattcaaggcctgatataaagctatta
atcatgtctgctaccttgaatcaaaaattattggccaaagaacttaaggcaaaagtggtg
gttagcgaaggtaggcaatatcctgtcgatatcgtctatgctggaaatttagatcaaaga
ttgatcgcagaattaaccgcagaacaaattaaaagatccttaatagaagatgaaggagat
attttggttttccttccgggtcagggcgagattttaggaatacaagatttgctaagaaaa
gctaaaataaaagcagaaatctgtccactttacggccagcttccatggccaaagcagtgg
tccgccattcagccccacccaaaaggaaaacgtaaagtcgttttagccacctccatcgca
gaaacaagtttgacaattgaaggtataaaaattgtaattgacacaggactaaaaagaaat
tcaatttttgatcccaattcggccttaaatagcttaataactcaaaatatctcgcaagat
gaagcaacacaacgagctgggagggcaggaagagtagctgctggaaaatgctatagaatg
tggactcaaacagaacaaaatttaaaacccagccacagattggctgaaatcctttatgct
gatttagccaacttaaaattggatttggctgctcgaaacattcatgaaagtaaaaaactt
ttttggctgactcctccccctttggataagctgatatatgctgaaaacttattgaatcaa
ttggaggctatagacgctgagaagcatataactgaagttggtaaacaaatgcaccaactc
ccatgccatccaagattggcacatatgctagtgaaatctaccgaaaatttatctcttgct
gttgatattgcagctttactagaagaaaaagacccgctgtataaaaaggcaggtgctgat
ataagcgaaagaattgaaacccttagaacactaagaaatgaaaaaagattgggaagaaat
tttaaaaagatagaaaaaatcgcttcctcctaccgatcacttttcaatattgatgaggac
aatagcgaaattgatccttatgcaatcggatacttactagccatggcctaccctgacaga
attgcttccgcaaaaagaggcaataatgctcagtttcaattgtcaaatggcagtatagcg
gctatagggcataaagatgaattagctgatgaaagctggttgactgtagctaatatggat
gccagaagtggaatgggaaaaatatttttagcggctccccttaatcccagagacttaaaa
cccttggttaaaaataaacgctcagtgaaatggaattttgatgatgatgagtttgtagtc
agtgaagatttaagtatcggaaatatcattttaaaaagtgaggagctggaccaagaatca
agcccttttgaaaaaagaaacgctataattagagcattgcagctgcattacgaggaactt
cttagacctgatgatgaatttgctaattacctacaagaactgaaaattaaaagtgatgaa
ttgcttgatttagatctgaaatttctaggtataactgctgaaaggtggttaccagtggga
attgaaaatgatcaacaggtattaaaaaagattcaacagctttctttaacatcaattctc
cgaaatctaattacatcctag
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