Methanosarcina hadiensis: RSJ42_00330
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Entry
RSJ42_00330 CDS
T10775
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
mhab Methanosarcina hadiensis
Pathway
mhab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSJ42_00330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhab03019
]
RSJ42_00330
Messenger RNA biogenesis [BR:
mhab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
RSJ42_00330
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
RSJ42_00330
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Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
OB_RRP5_4th
ECR1_N_2
S1
HypA
zf-C3HC4_3
Motif
Other DBs
NCBI-ProteinID:
XMB89318
LinkDB
All DBs
Position
69948..70913
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AA seq
321 aa
AA seq
DB search
MIRIRKNKTTRKKLTGPGEGKPGTEKETPGSEENRDQFKGQQRDQPRAQFKTQPREQARD
QPKGQPRTQFKSQPRDQSRDQPRGQSRGQSKDQYRGEADKKRKFSYPKKGGGPRDRKESQ
GFRPPAEPVTPEEDLEKGGFVLPGELVGTTEEFKSGDGTAVIAGDIYSTATGNVLIDRKA
RIVSVKPNTITPNILKVGDIIYGRITDVRESGAMVEIAGIEGKENREVVGARPGDIHVSN
VRDSYVKRLADEFRPSDIIRARVIDVERMRLTTAEDSLGVVKAYCSNCKGELVLEGKKLK
CPVCNMTETRKISTEYGKGIR
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgattagaattcgaaagaataagactactaggaaaaaattaacgggtcctggtgaagga
aaacctggaactgaaaaagaaactccagggagtgaagaaaacagggaccagtttaaaggt
cagcagagggatcagcccagggctcagtttaaaacccagccaagagagcaggcaagagac
cagccaaaaggccagcccaggactcagtttaaatctcaaccccgagaccagtcaagggat
caacctcgcgggcaatccagaggccagtcaaaggaccagtacagaggagaggctgacaaa
aagaggaagttctcctatcccaagaaaggcggcggccccagagacagaaaagaatcccag
gggttcaggcctcctgcagaacccgtaacacccgaagaagaccttgaaaaaggaggtttt
gttcttcccggagaacttgtaggaactacagaggaatttaaatcgggcgacggaactgca
gtaattgcaggagacatttattctactgcaacaggcaacgtactcattgacagaaaagcc
aggatagtctcggtaaaaccaaacactattactccaaatatcctgaaagtaggagatatc
atctacggcaggatcacagatgtgcgcgaatccggagcaatggtggaaattgcagggatc
gaaggaaaagaaaacagggaagtcgtaggtgcaaggcccggggatatccatgtctcgaat
gtaagggactcctatgttaagaggctggcagatgagttcaggccttctgatattataaga
gccagggtcattgatgttgagagaatgcggcttaccacagctgaagattctcttggggtc
gtaaaagcttactgttcaaactgcaaaggagaacttgtgctggaagggaaaaagcttaaa
tgtcctgtctgcaatatgactgaaacccgtaagatctcaactgagtacgggaaggggatc
aggtaa
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