Methanosarcina hadiensis: RSJ42_02915
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Entry
RSJ42_02915 CDS
T10775
Name
(GenBank) DUF5814 domain-containing protein
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
mhab Methanosarcina hadiensis
Brite
KEGG Orthology (KO) [BR:
mhab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhab03019
]
RSJ42_02915
Messenger RNA biogenesis [BR:
mhab03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
RSJ42_02915
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5814
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MGP3_C
Motif
Other DBs
NCBI-ProteinID:
XMB89791
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All DBs
Position
657376..659856
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AA seq
826 aa
AA seq
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MTLWVLGYAEKSKVIVMTIKDRMKQPLSVAELNIKENYKGPRPHKIRLLTGKKNEEFIPP
QQFIELLRSANRIMLAEGGDPANEEAFLEMLKAFQLSADRVKICNHCRINKRFNFVNSKS
IKYHDELICAECAKEELLRAVRSAGSQYGEKSVDFLEQVLHKTRDLDRTIRMLSPERLDP
EFTRYDTIRTTPSEAKVRVKNLPLAKKFKEMLLEKSETLLPVQALSVEAGLLEGKNQFVV
SATATGKTLIGEMAGVQNLLDKKGKMLYLVPLVALANQKYDQFTERYSKLGLTTSIKIGA
ILIKTSQRVKMHTSPNADIIVGTYEGVDHMLRAGNTDYLGKIGTVVIDEVHTLEDQERGH
RLDGLIGRLRYVAPEAQFIYLSATVANPAGYAKKLGAQLVRYEHRPVPIDRHLLFCQDSE
KAKLISQLAKEEYSMFSSKNHRGQTIVFTNSRRNCHKLAAALSIRASPYHAGLSQYERKK
VETLFAKGELPVIVTTAALASGVDFPASQVIFESLAMGIDWLSVQDFLQMSGRAGRPDYH
DRGVVVLMPVPGKSYSSAQSDTEEEVAIKLLQGEMLSAGVKYGEAEQLEEVLASVAVTSS
VQDLRNIHTLMFGSYDLDKLVSRLQSYRFLEKKGNKVALTRFGKIISAHFLPVSKAFLIR
DAVLEENSPIKIVTNLEFFDAAYFKYANQIGSSLHVNMPARVFQGAALDIVFDGESLSHL
DIKIRELMLNFASDFLTCGCRDSPYCGCAEQKFSEKIIRLRMEGQDPSHIIKTLEDKYGI
SAYQGDVFGYLDNAVRNLDAVELIARVHSKKDVAENAKKLKKKVQG
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgacactgtgggtcctcggttacgccgaaaaatcaaaagttatagtaatgacaataaaa
gaccggatgaagcagccgctttccgtggccgagctcaatataaaggagaattataaaggt
ccacgccctcacaaaatcaggcttcttaccggcaaaaagaatgaggagttcattcctccc
cagcagttcatagaacttttacggagtgcaaaccgaattatgctggcagaaggaggggac
cctgcaaatgaagaggcgttccttgaaatgctcaaagcattccagctgagtgcagataga
gtaaagatctgcaatcactgccgtattaacaagcgttttaatttcgtaaacagcaagtca
atcaagtatcatgatgagcttatctgtgcagagtgtgcaaaagaagaactcctgcgtgca
gtacgttctgcaggttcacagtacggagaaaagtccgttgatttccttgagcaggttctt
cacaagacaagggaccttgacaggactatccgtatgctaagcccggaaaggcttgaccct
gaattcacacgatacgatacaatcaggacaacaccttcggaagcaaaggtcagggtaaag
aaccttccccttgcgaaaaagttcaaagaaatgcttcttgagaaatcagaaacacttctc
ccggtgcaggcactctcagtagaagccgggcttctggaaggaaaaaaccagtttgtggtt
tctgcgaccgcaaccggaaaaactcttatcggggaaatggcaggagttcagaacctgctg
gacaaaaagggcaaaatgctttacctggtccctcttgtagcccttgcaaaccagaaatat
gaccagtttacggaacgatattctaagctcgggctcacaacttcaatcaaaatcggtgca
attctcataaaaacctcccagcgcgtgaagatgcacacaagtcccaatgccgatattatt
gtggggacctatgaaggcgtagaccacatgctgcgcgcaggaaatactgattacctgggc
aagattgggactgttgttatagatgaggtccatacccttgaggaccaggaaagagggcac
aggcttgacgggcttataggaaggctccgttatgtggctcctgaagcccagtttatatat
ctctcggcaaccgttgcaaaccctgcaggatatgcaaagaaactcggagcacagcttgtc
cgctatgaacacaggcctgttcctatagatcggcatctccttttctgtcaggacagcgaa
aaagcaaaattgatttcccagcttgcaaaagaagagtattcgatgttctcctcgaaaaat
cacaggggacagacaatagtctttacgaactcaaggagaaactgccataagcttgcagca
gccctttcaatccgggcatccccttaccacgcagggctttctcagtatgaaagaaagaaa
gtggaaaccctttttgcaaaaggagaacttcctgtaatcgtaactactgccgctcttgca
tctggggtggattttccggcttctcaggttatattcgagtcccttgcaatgggcatagac
tggctttctgtccaggacttcctgcagatgagcggaagggcaggcaggccagattatcat
gaccggggcgttgtcgtgctcatgccagttccagggaaatcctattcaagtgcacagtcc
gataccgaagaagaggttgcaataaagctgctgcagggagagatgctttccgcaggagtg
aagtacggggaagctgaacagcttgaagaggtgctcgcctcggttgcggttacttcttcg
gtccaggatttaaggaatatacatacccttatgtttggaagctatgacctggataaactg
gtttccaggctccagagctacaggttccttgagaaaaagggaaacaaagtggcgcttaca
aggttcggtaaaatcatttcagcccattttctcccggtctccaaagctttccttattagg
gatgccgtactcgaagaaaacagtcctattaaaattgtaactaacctggaattcttcgat
gctgcatactttaagtacgcaaaccagattggaagctctctgcatgtcaatatgcctgcc
agggtctttcagggggcagcccttgatattgtctttgacggagaatccctgtcccatctc
gacataaaaataagggaacttatgctgaactttgcttcggattttttaacctgcgggtgc
agagattccccttactgcgggtgcgcagagcagaagttttcagagaagattatccgcctg
cgtatggaaggtcaggacccctctcatatcatcaaaacccttgaggataaatacggcatc
tcagcataccagggagacgtttttgggtacctggacaacgcagtgcgcaaccttgacgct
gtcgagctgattgcaagggtccattcgaaaaaagacgttgcagaaaacgcaaagaaactc
aaaaagaaagtccagggctga
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