Methanosarcina hadiensis: RSJ42_03165
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Entry
RSJ42_03165 CDS
T10775
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mhab
Methanosarcina hadiensis
Pathway
mhab04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mhab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
RSJ42_03165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhab03019
]
RSJ42_03165
03009 Ribosome biogenesis [BR:
mhab03009
]
RSJ42_03165
04131 Membrane trafficking [BR:
mhab04131
]
RSJ42_03165
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mhab04147
]
RSJ42_03165
Messenger RNA biogenesis [BR:
mhab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
RSJ42_03165
Ribosome biogenesis [BR:
mhab03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
RSJ42_03165
Membrane trafficking [BR:
mhab04131
]
SNARE
SNARE associated proteins
Others
RSJ42_03165
Autophagy
Aggrephagy
Other aggrephagy associated proteins
RSJ42_03165
Exosome [BR:
mhab04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
RSJ42_03165
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_2
AAA_5
AAA_14
CDC48_2
TIP49
AAA_22
AAA_33
NACHT
NPHP3_N
nSTAND3
ABC_tran
Mg_chelatase
Parvo_NS1
AAA_28
Sigma54_activat
RNA_helicase
IstB_IS21
AAA_7
AAA_24
AAA_17
NB-ARC
AAA_18
AAA_lid_PRS2_C
TsaE
Vps4_C
Zeta_toxin
nSTAND_NTPase5
AAA_25
AAA_11
AAA_3
ORC-CDC6-like
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
XMB90978
UniProt:
A0ACH3WKV2
LinkDB
All DBs
Position
720730..723024
Genome browser
AA seq
764 aa
AA seq
DB search
MTDGDKSIIKLKVAEADQRDVGKGIVRIDEKFRERLGLKPFDVVEIKGGKSTSALIGRPY
PSDSGLDIVRMDGLIRMNAKTSIGEYVDIRKADWKEAKTVTLAPVAKGMQIYAPSETLKA
VFMNRTVSKGDFISTTSLRRSRERETFGKGVMFEDFFQDFFGQGFGQSFGLGEIKLQVVS
TTPSGIVKITDMTQIELLPEATEITPEQNIPTVMYEDLGGLKDAIGKVREMIELPLKHPE
LFDRLGIDAPKGVLLHGPPGTGKTMLAKAVANESDAYFISINGPEIMSKYYGESERAIRE
IFEDAEKNAPAIIFLDEIDSIAPKRAEVTGEVERRVVAQLLSLMDGLKARKNVIVIGSTN
RPEAIDIALRRPGRFDREIELRVPDTEGRLEIFQIHTRGMPLADNVNLMDFAQITYGFVG
ADIAALCREAAMSALRRILPKINLNEPEIPSEILDSLQVTREDFESALKDVQPSAIREIL
IEVPNVGWDDVGGLGEVKELLKEAVEWPLKSPESYRDIGVEAPKGVLLYGPPGTGKTLLA
KAIAHESDANFITAKGSDLLSKWYGESEKRIAEVFTRARQVAPSIVFLDELDSLAPVRGA
STGEPQVTARILNQLLSEMDGLEELRAVVVIGATNRPDMIDPALLRPGRFDELILVPVPD
EGARREIFRVHTENMALAEDVDIEKLVSLTDQYTGADIAAICKKAGRHALREDLHAKNVK
QKHFLQAIEETGPSVTPDTMKYYQAIKGELRKRKSKEIESPYYI
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
ctgactgacggggataaatcgattataaaacttaaagttgcagaggccgaccaacgggac
gtaggaaaagggattgtcaggattgatgaaaaattcagggagagactgggcctgaaaccc
tttgatgttgtggaaatcaaaggtggaaaatcaacttccgctcttataggccgtccctat
cccagtgattccgggcttgatatcgttcgtatggatgggcttatccgtatgaatgcgaag
accagcataggggagtacgtggatattcgcaaagccgactggaaagaagcaaagactgta
actcttgcgcctgtagccaaaggaatgcagatttatgctccgagtgagacacttaaagcc
gtatttatgaaccgtacggtttcaaaaggggattttatttccactacaagccttagaaga
tccagggaaagggaaacttttggtaaaggggtcatgttcgaggacttcttccaggatttt
ttcgggcagggcttcggtcaatctttcgggctcggagaaataaaactgcaggtggtttcg
actaccccttccggaatagtgaaaataacagacatgactcagatagagcttttaccggaa
gcaacagagatcactccggagcagaatatccctactgtaatgtatgaagaccttgggggg
ctcaaggatgccattggcaaggtaagggaaatgatagagctgcctctgaagcatcccgaa
ctctttgacaggctcggaatagatgctcctaaaggcgtgctgcttcacgggcctccgggg
acgggcaagacaatgctagcaaaagcggttgcaaatgagtcggatgcttatttcatttcc
attaacggccctgaaatcatgtcgaagtactacggggaatccgaaagggcaataagggaa
atctttgaggatgcagagaagaatgctcctgcaattattttccttgatgaaatcgattcg
attgcccccaaaagggctgaggtcacaggtgaagtggaaagaagagtggtcgcccagctt
ctgtccctgatggacgggcttaaagctcgcaaaaatgtgattgttatagggtcaaccaac
cgcccggaggccatagatattgcactccgccgccctggcaggtttgaccgtgagattgag
ctcagggttccggataccgaaggaaggcttgagattttccagatccatacaagaggaatg
cctcttgcggataatgtaaacctgatggactttgctcagattacatacggttttgtagga
gccgatattgctgcattatgcagggaagcagcaatgagtgcactgagacggattttaccc
aaaattaacctcaatgagcctgaaatcccgagtgagatccttgattcccttcaggtcaca
agggaagactttgaaagtgccctgaaagatgtccagccatccgctataagagaaatcctt
atagaagtcccgaacgtgggctgggatgatgtgggcgggcttggggaggtaaaagagctc
ctgaaagaggctgtggaatggccgttgaaaagccctgaatcttacagggacataggggtt
gaggctcccaaaggtgttctcttatacggccctccgggtactggaaagaccctccttgca
aaagccattgcacacgagtcagatgccaattttattacagcaaaaggaagtgaccttctc
tccaaatggtacggtgagtccgaaaaaaggattgctgaggtatttacgcgcgcaaggcag
gtcgctccttccatagttttccttgacgagcttgactctcttgcacccgtacgcggcgct
tctacgggcgagcctcaggtcacagcaagaatccttaaccagctcctttcggaaatggac
gggcttgaagagctcagggctgttgttgtaatcggggcaaccaacaggcctgatatgata
gacccagctcttctcaggccagggcgttttgatgaactcatccttgttcctgttccggat
gaaggagcccgaagggagattttcagggtccataccgagaatatggctcttgcggaagat
gttgatattgaaaaacttgtttcccttacggaccagtatacaggtgcggatattgcagct
atatgtaaaaaagcggggaggcatgctctccgtgaagaccttcatgcaaaaaatgttaaa
caaaaacatttccttcaggcaattgaagagaccgggccttctgtcactccggataccatg
aaatactaccaggcaataaaaggcgaactgaggaagagaaaatcaaaggaaatagaaagt
ccctattacatctga
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