Methanosarcina hadiensis: RSJ42_03545
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Entry
RSJ42_03545 CDS
T10775
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mhab Methanosarcina hadiensis
Brite
KEGG Orthology (KO) [BR:
mhab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhab03032
]
RSJ42_03545
03400 DNA repair and recombination proteins [BR:
mhab03400
]
RSJ42_03545
Enzymes [BR:
mhab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RSJ42_03545
DNA replication proteins [BR:
mhab03032
]
Prokaryotic type
DNA Topoisomerases
RSJ42_03545
DNA repair and recombination proteins [BR:
mhab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RSJ42_03545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
OEP
Toprim_2
Toprim_4
Auto_anti-p27
DUF1451
Motif
Other DBs
NCBI-ProteinID:
XMB89904
LinkDB
All DBs
Position
complement(795805..798315)
Genome browser
AA seq
836 aa
AA seq
DB search
MTVVAFAEKNKAAAQIASILGDGEVDKISVEGLPAYEFKWKGEEWLVMGLSGHIMNYDFP
EKYNKWSEVDPGTLLGVDPEKFVTRKEYEAAIKNLAKRADKIILACDYDREGENIGFEAK
TLAEEVTNVPVSRARFSALSPKEVRKAFESPVDPDHNLAMAAEARQILDLKMGAAFTRFV
TLSVREKARTKDVLSIGPCQTPTCGFVYEREKAIRAFEAKDFWKITAIFAAKGGEFEGTH
RAGNIHDKEKAAEIFKRLKGAKEGLVVKKTVKEAKTSPPNPLNTTEFLKRASKFLGISPE
VALETAEQLYLAGFTSYPRTETNKYADDFDFKSLVFDFARQKEYKPFAESILSAPIVPKN
GEKDAHDHPPIHPIRAAARGEVSSAVNIPQAAEVYDLISRHFLANLMPAAVFEKTHLHLK
VQEEPFDSSGTVLKDAGWLEAYPFENKKDKLLPFVEEKEKVDVKKLSNTKSKTSPPKKLT
EAELLTLMDKHGIGTKATAPTHIETNKKRGYFETKGKTVSILDTGFTLMEGLSLSVPILV
RPDIRSKIEALIQEVEDGKKEFEAALDEGTVLIKEMYAQLEANKKELTSNIAGTIKDEAA
LEDKKNYIGSCKACGHVLRIVQTDSGRFVGCTGYPDCRNSFPLPKTGALTVLRSKECKKE
GAAVLKVGNKYNWAVGIGPCFKCELEKECYPPETVGPCPECDGSMFLISFKDNRFLGCTK
RCGYTHSVPKTGKLTLLDKACESCGWKLFRLKEEKGEGEGNESPEEDICINRRCTEGIKY
WKKVGPRNENRAQQKRVSAEPSAGPGEKSTARSAERQATGRVSKAASAAGGRKESK
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgacagttgtcgcatttgcagaaaaaaataaagcagcagcccagatcgccagcatcctt
ggcgatggggaagtggataagatatcagtcgaagggctccctgcttacgaatttaaatgg
aaaggggaagagtggctggtaatggggctgtccgggcacattatgaactatgattttcct
gaaaagtataataaatggagtgaagttgacccgggcacactacttggagttgaccctgaa
aagttcgtaaccaggaaagagtacgaggctgcaataaagaacctggcaaaaagggcagac
aaaattatccttgcatgtgactatgacagggaaggggaaaacatagggtttgaagcaaaa
acccttgccgaagaggttacaaacgtacctgtttcaagggcacgtttttcagcgctctcc
ccaaaagaggtcagaaaagcttttgagagccctgtagaccctgaccataacctggctatg
gctgcggaagcaaggcagatccttgacctgaaaatgggggctgcatttacacgttttgtt
acgctctcggtaagggaaaaggcaaggacaaaagacgtcctttcaatagggccctgccag
acacctacctgcgggtttgtatatgaaagggaaaaggctattcgtgcttttgaagcaaaa
gacttctggaaaatcactgcaatctttgctgcaaaaggcggggaattcgaaggcacccac
agggcaggaaacatccatgacaaagaaaaagcagctgagatcttcaagcgactgaaagga
gcaaaggaagggcttgttgtaaagaagaccgtaaaagaagcaaaaacgagccctccgaac
cctctgaatactacggagttcctgaaacgggcttcaaagttcctgggaatcagccccgaa
gttgctcttgaaacggctgagcagctctaccttgcagggtttacaagctacccgaggaca
gagaccaataaatacgcagatgactttgacttcaagtcccttgtctttgattttgcaagg
caaaaagagtacaaaccttttgctgaatcaatcctctcagccccgatagtgccaaagaat
ggggaaaaagacgctcatgaccatccccctatccacccaatccgggcggctgcaaggggg
gaagtaagttccgcagtaaatatcccgcaggcagcagaggtctatgaccttatttcaagg
catttcctggcaaacctgatgcctgcagcagtatttgaaaaaacccatcttcacctgaag
gttcaggaagagccttttgactcctcaggcacagtgcttaaagatgcaggctggctcgag
gcctatccgtttgaaaataaaaaagataagcttctcccatttgtggaggaaaaagaaaag
gttgacgtaaaaaagctgagcaatacaaaatccaaaaccagccctccaaagaagcttact
gaagctgaactcctgacccttatggacaagcacgggatagggacaaaagcaacagctccg
actcacatcgagacaaacaaaaagcggggttatttcgagaccaaaggaaagactgtttcg
atccttgatacaggctttaccctcatggaagggctttccctgtcagtcccgatccttgta
aggcctgatatccgctcaaagattgaagctctcatccaggaagtggaggacgggaaaaaa
gagtttgaagccgctctcgatgaaggcaccgtcctgatcaaagaaatgtatgcccagctt
gaagcaaacaaaaaagagctgacttcaaacattgcaggcacaataaaggacgaagcagcc
cttgaagacaagaaaaactacatagggagctgcaaggcttgcgggcatgtgctgaggata
gtacagacagattctggaaggtttgtcgggtgcacgggctatcccgactgcagaaactcg
ttccccctgccgaaaaccggagccctgaccgttctcaggagcaaggaatgcaaaaaagaa
ggggcagccgtccttaaggtaggaaacaaatacaactgggccgtaggcataggtccatgc
tttaaatgtgaacttgaaaaggaatgctaccctcccgaaaccgtgggaccctgtccggaa
tgcgacggaagcatgttcctgatatcttttaaggataaccgcttcctgggctgcacaaaa
cgctgcggatacactcattcggtcccaaagaccggaaaattgacccttctcgataaagcc
tgtgagagctgcggctggaagctgttcaggctgaaagaagagaaaggagaaggagaagga
aatgaaagccctgaagaagatatctgtataaaccggcgctgcacggaaggaataaaatac
tggaaaaaagtggggcccaggaacgaaaaccgcgcgcagcagaagagagtttctgcagaa
ccttcggcaggacctggggagaaaagtacggcaagaagtgcggaaagacaggcgacaggc
agagtttcaaaggctgcgtctgctgcaggcggcagaaaagagagtaaatga
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