Methanosarcina hadiensis: RSJ42_05695
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Entry
RSJ42_05695 CDS
T10775
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
mhab Methanosarcina hadiensis
Pathway
mhab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RSJ42_05695 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhab03400
]
RSJ42_05695 (uvrB)
DNA repair and recombination proteins [BR:
mhab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSJ42_05695 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RSJ42_05695 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_30
AAA_16
T2SSE
P-loop_SecA
AAA_25
DUF87
UB2H
Flavi_DEAD
Kinesin
Motif
Other DBs
NCBI-ProteinID:
XMB90292
LinkDB
All DBs
Position
complement(1320629..1322641)
Genome browser
AA seq
670 aa
AA seq
DB search
MKISSQTPEALSDKKFETIHDARYWDSPQFKLVSDFEPKGSQPQAIEELVEGLRRKEQFQ
TLLGVTGSGKTYTVANVINQIKKPTLVIAHNKTLAAQLYNEFREFFPENRVEYFVSYYDY
YQPESYLPAKDQYIEKDAQINPKIEQMRLAATASLMSRQDVIVVASVSCIYGLGNPENFQ
KMGFELKVGDRVQRKEILEKLIDIQFERNDLELMPGRFRVKGDTIDIIPGYFDDIIRIEL
FGDEVDRISEVDKQSGQRKEDMDYFFVYPARHYVIPEEEQKSAIQSILEELEGRLPELGL
LESHRLKQRTLYDMEMIQETGSCKGIENYSRHFDHRKPGEQPFCLLDYFPDDFLLVIDES
HQTIPQLHGMYNGDRSRKKSLVDYGFRLPSAFDNRPLKFEEFEKYMKNVIFVSATPADYE
REQSSRIVEQIIRPTGLVDPEVEVRPLEGQVRDVMQEIRKIVERGDRALVTTLTKKLAEE
LTEFLARNEIKARYLHSDIKTIERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGIL
DADKEGFLRNSKSLIQIIGRAARNSNSRVVLYADNMTDSIKAAVQETERRRAMQIAYNEK
HGIVPTTIRKPIREKVVDITDTKHIPKTDIPNVIIELDAEMREAADRLDFERAIQVREII
KKLEKEIKAV
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatttccagccagacacccgaggcgttatccgataaaaaattcgaaacaatacac
gatgcaaggtactgggacagccctcagtttaaactggtttccgattttgagcctaaaggt
tcccagccgcaggcaatagaagaacttgtggaagggctcaggagaaaagagcaattccag
actttgcttggggttaccggatcaggaaaaacctatactgttgcaaatgtaataaatcag
attaaaaagccgactcttgttattgctcacaacaagactctggctgcccagttatataac
gagttcagggagtttttccctgaaaaccgcgttgagtattttgtctcatattatgactat
taccagcctgaatcttatcttcctgccaaggaccagtatattgaaaaagatgcccagata
aacccgaaaattgagcagatgcgtcttgcagccacagcttctttgatgtccaggcaggac
gtaattgtggtggcgtcggtatcctgcatctatggtctgggcaaccctgagaatttccag
aaaatggggtttgaacttaaggttggagacagggttcagaggaaggaaatccttgagaaa
cttatcgatattcagtttgaaagaaacgaccttgaactcatgcctgggcgctttagagta
aaaggtgatactattgacattattcccggttactttgatgatatcatccggatagagctt
tttggggacgaggtggacaggatttccgaagttgacaaacagtccggacagcggaaagaa
gatatggattatttcttcgtatatcctgccaggcactatgttatacctgaagaggaacag
aaaagcgcaatccagtctatccttgaagagcttgaaggacgcctgcccgaactcgggctg
cttgagtctcacaggttaaagcagcgcacactgtatgatatggaaatgatccaggagaca
ggaagctgcaagggaatagagaactattcaagacattttgaccatagaaaaccgggagaa
cagcccttctgcctgcttgactatttccctgatgacttccttctggttattgacgaaagc
caccagactattccgcagctgcacggaatgtataatggggacaggtcacgaaagaagagc
cttgtagattatggtttcaggctcccaagtgcttttgataacaggccgctgaagtttgag
gaattcgagaagtacatgaaaaacgtgatcttcgtctcggcaacccctgcagattatgag
cgtgaacaatcttcccggattgtggagcagattatccgccctacagggcttgttgaccct
gaagtagaagttcgtccgcttgaaggccaggtcagggacgttatgcaggagatccggaaa
atagtggagaggggagaccgtgcccttgttaccacccttaccaaaaagcttgcagaagag
ttgaccgaattcctggcaagaaacgagattaaggcacgctatctgcactcggatatcaag
acaattgaaaggacggaaattatccgcgaactgcgccttggcaaatttgatgtgcttgtt
ggcattaacctgctcagggaagggctcgatattcccgaggtaggttttataggaatcctt
gatgcagataaagaaggcttcctgaggaattcaaagagcctcatccagatcataggccgc
gcagcacgaaactccaattcaagggttgtcctctatgcagacaacatgacagattctatc
aaagcagcggtacaggagactgaacgccgccgtgcgatgcagatcgcctataatgaaaaa
cacggcattgtccctacaactatccggaaaccaattcgagagaaagtcgtggatatcacg
gatacaaaacatatcccgaagaccgatattccaaatgtgattatcgaactggatgctgag
atgagggaagccgccgacaggctggacttcgagcgtgcaatccaggtcagggaaattata
aagaagctggagaaagagataaaagcagtgtga
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