Methanosarcina hadiensis: RSJ42_06120
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Entry
RSJ42_06120 CDS
T10775
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mhab Methanosarcina hadiensis
Brite
KEGG Orthology (KO) [BR:
mhab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhab03032
]
RSJ42_06120
03400 DNA repair and recombination proteins [BR:
mhab03400
]
RSJ42_06120
Enzymes [BR:
mhab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RSJ42_06120
DNA replication proteins [BR:
mhab03032
]
Prokaryotic type
DNA Topoisomerases
RSJ42_06120
DNA repair and recombination proteins [BR:
mhab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RSJ42_06120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
HHH_5
DUF4332
Cdd1
DNA_pol_lambd_f
RAD51D_N
IMS_HHH_1
Motif
Other DBs
NCBI-ProteinID:
XMB90376
LinkDB
All DBs
Position
complement(1436544..1438799)
Genome browser
AA seq
751 aa
AA seq
DB search
MHLIVTEKNIAARRIAAILAPKSPKKERVSGVDVYRYEVGSGESRQETAVVGLSGHIVGI
DFPKEYNNWQKIDARALIDAEITTTPINRKIVTALKSLGKEADRVTIATDYDREGELIGV
EALNIIKQVNPKVPFDRVRYSAITPKAIETAFANPTNVDFNLADAGHSRQVIDLVWGAAL
TRYISLAAGRLGKMFLSVGRVQSPTLSLIVDREKERNIFVPTPYWEIHVELEDAAGETFS
AQHSTRRFLEKEEASKVFRKLGKKAELKEIEKGTKTDQPPTPFNTTGFISAANSIGLSPV
NAMRIAESLYTNGYISYPRTDNTVYPDTLDLRAQIEIFKEGPFREYANALLEKPELVPTR
GKKETTDHPPIFPASLAKEADLKEEEWKVYELVVRRFFATFAGPSIWETMRLKLDIEEEE
FRANGARLLEQGWRWYYPYNAPEDRLLPELKEGDLLKVIKKEMLDKETQPPGRYGQGRLI
NIMEDLGLGTKATRHEIISKLYSRAYIHGNPVQPTNTSFAVMDTLEKYSPTITKPDMTKL
LEENMDKIAEGKIKEDTVLDESRDMLKQVFSELDKNRDNIIESLQAGLREDKIIGNCSLC
GNELMIRRSKRGSRFIGCSNYPNCTFSLPLPKSGQIVVIDKQCETHGLHHIRIINQGKRP
WDLGCPQCNFIEWQKTQQEEQAQQPKKEKPKFIKDLEGVGKATAGKLEEAGITSVEALAE
ADPVELAKTIKISVKKVKNWQTSCNGAVEDL
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgcatctaatcgtaacggaaaaaaatatagcagcaaggaggatagctgcgattctggct
ccaaaaagtcctaaaaaggaaagagtcagcggagtagacgtataccggtacgaggttgga
tccggcgaaagcagacaggaaactgcagtagttgggctttccggccatattgtcgggata
gattttccaaaagaatataacaactggcagaaaattgatgcaagagccctgatagatgcc
gagattacgacaacccccataaaccggaaaatagtgactgctttaaagagccttggaaaa
gaggcagacagggtcactatcgcgaccgactacgaccgtgaaggagaattgataggagtc
gaagctctgaatattattaaacaggtcaacccgaaagttcctttcgacagagtccgttac
agcgcaataactccaaaagcaattgaaaccgcatttgcaaatcctacaaacgttgatttt
aacctcgcagatgcaggccactccaggcaggtaattgaccttgtatggggggctgcactt
accagatatatttcccttgcagcaggcaggctcggaaaaatgttcctatccgtgggaagg
gtccagtctccaaccctatctcttattgttgatagggaaaaagaaaggaatatcttcgtc
ccgacaccgtactgggaaatccatgttgaacttgaggatgcagcaggagagacattctca
gcccagcactcaacccgccgcttccttgagaaagaggaagcttcaaaggtattcaggaaa
ctgggcaagaaagcggaactaaaagagatcgaaaaagggacaaagaccgaccagccccct
actccatttaacactacaggttttatcagtgcggcaaactcaatagggctcagcccggta
aatgctatgcgaatagccgaatccctttacactaacggttatatctcatacccaaggaca
gacaacactgtttatcccgatactctggacctcagggctcaaatagagattttcaaagaa
ggacctttcagggaatatgcaaacgctctgcttgagaagcccgaacttgtcccaacccgc
gggaaaaaagaaactacggaccaccctcctatatttcctgcttccctggcaaaagaagct
gacttaaaagaagaggaatggaaggtttacgaacttgttgtcaggcgcttttttgcaacc
tttgccggaccgagcatatgggagacgatgcgccttaaactcgacatcgaagaggaagaa
ttcagggcaaacggagcaagactgcttgaacagggctggcgctggtattatccgtataat
gctcctgaggataggcttctcccggaactcaaggaaggcgacttattaaaagtgataaag
aaagagatgctggataaagagactcagcccccgggccgttacggacagggcaggcttatc
aatataatggaagatctcgggcttggtacaaaagctacccgtcacgaaattatcagcaag
ctgtattccagggcttatatacacggaaaccctgtccagcccacgaatacctcttttgcc
gtaatggataccctcgaaaaatattcgcctactattacaaagccggatatgacaaagctg
cttgaagaaaatatggacaaaatagcagagggcaaaatcaaagaggatactgtccttgat
gaatccagggatatgctcaagcaggtcttttcggaacttgacaaaaacagggataatatc
atagaatccctgcaggcgggcttaagggaagacaaaatcataggcaactgctccctgtgc
ggaaacgaactcatgatccgccgttctaaaaggggaagccgcttcataggctgcagcaat
tatcctaactgcactttttcccttcccttgccaaagagcggccagattgtggttatcgat
aagcaatgcgaaacacacggcctgcaccatatccgcattatcaaccagggaaaacgccca
tgggacctcggctgtccccagtgtaactttatagaatggcaaaaaactcagcaggaagag
caggcacaacagcctaaaaaagaaaagccgaaattcataaaagacctcgaaggcgttgga
aaagccacagcaggaaagcttgaagaagcaggaatcacaagtgtggaagcccttgcagag
gctgaccctgttgaacttgcaaaaacaataaagatcagtgtaaagaaggtcaaaaactgg
cagacatcatgcaacggggcagttgaggacttataa
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